Bioproject |
Description |
Publication |
GVCF File |
Library Num. |
PRJNA343064 |
Transcript data of pigeon pea shoot tissue. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR4267270 |
RNA-Seq of Cajanus cajan: 4 weeks salt tolerant pigeon pea genotype seedling shoot from India: New delhi\, IARI, ICP 7, Tolerant treated shoot (TTS) |
ILLUMINA |
9421450500 bp |
|
SRR4267271 |
RNA-Seq of Cajanus cajan: 4 weeks salt tolerant pigeon pea genotype seedling shoot from India: New delhi\, IARI, ICP 7, Tolerant control shoot (TCS) |
ILLUMINA |
11486681700 bp |
|
SRR4267272 |
RNA-Seq of Cajanus cajan: 4 weeks salt susceptible pigeon pea genotype seedling shoot from India: New delhi\, IARI, ICP 1071, Susceptible treated shoot (STS) |
ILLUMINA |
11755520400 bp |
|
SRR4267273 |
RNA-Seq of Cajanus cajan: 4 weeks salt susceptible pigeon pea genotype seedling shoot from India: New delhi\, IARI, ICP 1071, Susceptible control shoot (SCS) |
ILLUMINA |
9311903400 bp |
|
|
PRJNA344973 |
RNA-seq data was generated from embryo sac from the day of anthesis (0 DAA), seed and pod wall (5, 10, 20 and 30 DAA) of pigeonpea variety “Asha” (ICPL 87119) using Illumina HiSeq 2500. About 684 million sequencing reads have been generated from nine samples. |
Pazhamala et al., 2016 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR4341972 |
RNA-Seq of Cajanus cajan: reproductive stage plant with embryo sac from India, Em_0 |
ILLUMINA |
8914075170 bp |
|
SRR4341973 |
RNA-Seq of Cajanus cajan: reproductive stage plant with seed from India, Sd_5 |
ILLUMINA |
7362151994 bp |
|
SRR4341974 |
RNA-Seq of Cajanus cajan: reproductive stage plant with seed from India, Sd_10 |
ILLUMINA |
8363456702 bp |
|
SRR4341975 |
RNA-Seq of Cajanus cajan: reproductive stage plant with seed from India, Sd_20 |
ILLUMINA |
9550348304 bp |
|
SRR4341976 |
RNA-Seq of Cajanus cajan: reproductive stage plant with seed from India, Sd_30 |
ILLUMINA |
5956591756 bp |
|
SRR4341977 |
RNA-Seq of Cajanus cajan: reproductive stage plant with pod wall from India, Pw_5 |
ILLUMINA |
6884853062 bp |
|
SRR4341978 |
RNA-Seq of Cajanus cajan: reproductive stage plant with pod wall from India, Pw_10 |
ILLUMINA |
6952668704 bp |
|
SRR4341979 |
RNA-Seq of Cajanus cajan: reproductive stage plant with pod wall from India, Pw_20 |
ILLUMINA |
8049785648 bp |
|
SRR4341980 |
RNA-Seq of Cajanus cajan: reproductive stage plant with pod wall from India, Pw_30 |
ILLUMINA |
7049782224 bp |
|
|
PRJNA354681 |
A gene expression atlas of Cajanus cajan (CcGEA) provides a valuable resource for pigeonpea to identify candidate genes involved in specific developmental processes and to understand the well-orchestrated growth and developmental process in this resilient crop. |
Pazhamala et al., 2017 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR5199304 |
RNA-Seq of Cajanus cajan: reproductive stage mature seed from India, GEA_PP_30 |
ILLUMINA |
4204883681 bp |
|
SRR5199305 |
RNA-Seq of Cajanus cajan: reproductive stage immature seed from India, GEA_PP_29 |
ILLUMINA |
5025964654 bp |
|
SRR5199306 |
RNA-Seq of Cajanus cajan: reproductive stage mature pod from India, GEA_PP_28 |
ILLUMINA |
6401002647 bp |
|
SRR5199307 |
RNA-Seq of Cajanus cajan: reproductive stage shoot apical meristem from India, GEA_PP_27 |
ILLUMINA |
5524483637 bp |
|
SRR5199308 |
RNA-Seq of Cajanus cajan: reproductive stage sepal from India, GEA_PP_26 |
ILLUMINA |
7627823988 bp |
|
SRR5199309 |
RNA-Seq of Cajanus cajan: reproductive stage petal from India, GEA_PP_25 |
ILLUMINA |
6464377009 bp |
|
SRR5199310 |
RNA-Seq of Cajanus cajan: senescence stage root from India, GEA_PP_24 |
ILLUMINA |
6907901692 bp |
|
SRR5199311 |
RNA-Seq of Cajanus cajan: senescence stage leaf from India, GEA_PP_23 |
ILLUMINA |
7791224093 bp |
|
SRR5199312 |
RNA-Seq of Cajanus cajan: senescence stage petiole from India, GEA_PP_22 |
ILLUMINA |
7086307958 bp |
|
SRR5199313 |
RNA-Seq of Cajanus cajan: reproductive stage petiole from India, GEA_PP_21 |
ILLUMINA |
6959032744 bp |
|
SRR5199314 |
RNA-Seq of Cajanus cajan: senescence stage stem from India, GEA_PP_20 |
ILLUMINA |
2725480438 bp |
|
SRR5199315 |
RNA-Seq of Cajanus cajan: reproductive stage stem from India, GEA_PP_19 |
ILLUMINA |
3151886882 bp |
|
SRR5199316 |
RNA-Seq of Cajanus cajan: reproductive stage immature pod from India, GEA_PP_18 |
ILLUMINA |
2819871884 bp |
|
SRR5199317 |
RNA-Seq of Cajanus cajan: reproductive stage nodule from India, GEA_PP_17 |
ILLUMINA |
3091667482 bp |
|
SRR5199318 |
RNA-Seq of Cajanus cajan: reproductive stage root from India, GEA_PP_16 |
ILLUMINA |
3454045714 bp |
|
SRR5199319 |
RNA-Seq of Cajanus cajan: reproductive stage pistil from India, GEA_PP_15 |
ILLUMINA |
2728914542 bp |
|
SRR5199320 |
RNA-Seq of Cajanus cajan: reproductive stage stamen from India, GEA_PP_14 |
ILLUMINA |
2621135144 bp |
|
SRR5199321 |
RNA-Seq of Cajanus cajan: reproductive stage flower from India, GEA_PP_13 |
ILLUMINA |
3272108042 bp |
|
SRR5199322 |
RNA-Seq of Cajanus cajan: reproductive stage bud from India, GEA_PP_12 |
ILLUMINA |
2554982012 bp |
|
SRR5199323 |
RNA-Seq of Cajanus cajan: reproductive stage leaf from India, GEA_PP_11 |
ILLUMINA |
2969013792 bp |
|
SRR5199324 |
RNA-Seq of Cajanus cajan: vegetative stage leaf from India, GEA_PP_10 |
ILLUMINA |
1935337396 bp |
|
SRR5199325 |
RNA-Seq of Cajanus cajan: vegetative stage root from India, GEA_PP_09 |
ILLUMINA |
1646271172 bp |
|
SRR5199326 |
RNA-Seq of Cajanus cajan: vegetative stage nodule from India, GEA_PP_08 |
ILLUMINA |
2523213848 bp |
|
SRR5199327 |
RNA-Seq of Cajanus cajan: vegetative stage shoot apical meristem from India, GEA_PP_07 |
ILLUMINA |
2442257178 bp |
|
SRR5199328 |
RNA-Seq of Cajanus cajan: seedling stage root from India, GEA_PP_06 |
ILLUMINA |
2486019594 bp |
|
SRR5199329 |
RNA-Seq of Cajanus cajan: seedling stage shoot from India, GEA_PP_05 |
ILLUMINA |
2013371016 bp |
|
SRR5199330 |
RNA-Seq of Cajanus cajan: germinal stage embryo from India, GEA_PP_04 |
ILLUMINA |
1705098306 bp |
|
SRR5199331 |
RNA-Seq of Cajanus cajan: germinal stage hypocotyl from India, GEA_PP_03 |
ILLUMINA |
3455578422 bp |
|
SRR5199332 |
RNA-Seq of Cajanus cajan: germinal stage radical from India, GEA_PP_02 |
ILLUMINA |
2295184670 bp |
|
SRR5199333 |
RNA-Seq of Cajanus cajan: germinal stage cotyledons from India, GEA_PP_01 |
ILLUMINA |
3463220292 bp |
|
|
PRJNA382795 |
Transcriptome of salt- tolerant and salt- susceptible pigeon pea genotypes under control and salt treated root tissue. |
Chakraborty et al., 2023 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR5451688 |
RNA-Seq of Cajanus cajan: 4 weeks salt tolerant pigeon pea genotype seedling with root from India: New delhi\, IARI, ICP 7 , TTR |
ILLUMINA |
6066132300 bp |
|
SRR5451689 |
RNA-Seq of Cajanus cajan: 4 weeks salt tolerant pigeon pea genotype seedling with root from India: New delhi\, IARI, ICP 7 , TCR |
ILLUMINA |
4999451100 bp |
|
SRR5451690 |
RNA-Seq of Cajanus cajan: 4 weeks salt susceptible pigeon pea genotype seedling with root from India: New delhi\, IARI, ICP 1071 , STR |
ILLUMINA |
8323049700 bp |
|
SRR5451691 |
RNA-Seq of Cajanus cajan: 4 weeks salt susceptible pigeon pea genotype seedling with root from India: New delhi\, IARI, ICP 1071 , SCR |
ILLUMINA |
9090576900 bp |
|
|
PRJNA419874 |
Transcriptome profiling of isogenic lines in pigeonpea for identification of candidate genes and metabolic pathways associated with male sterility induced by A2 cytoplasm. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR6325908 |
RNA-Seq of Cajanus cajan: flower bud from India: Kanpur, ICPL 88039B Cognate maintainer line (CML B line), ICPL88039B-Rep1 |
ILLUMINA |
8708744400 bp |
|
SRR6325909 |
RNA-Seq of Cajanus cajan: flower bud from India: Kanpur, ICPL88039A-CMS A, ICPL88039A-Rep3 |
ILLUMINA |
4763059800 bp |
|
SRR6325910 |
RNA-Seq of Cajanus cajan: flower bud from India: Kanpur, ICPL88039A-CMS A, ICPL88039A-Rep2 |
ILLUMINA |
5203252800 bp |
|
SRR6325911 |
RNA-Seq of Cajanus cajan: flower bud from India: Kanpur, ICPL88039A-CMS A, ICPL88039A-Rep1 |
ILLUMINA |
5801249700 bp |
|
SRR6325912 |
RNA-Seq of Cajanus cajan: flower bud from India: Kanpur, ICPL 88039B Cognate maintainer line (CML B line), ICPL88039B-Rep3 |
ILLUMINA |
5461565700 bp |
|
SRR6325913 |
RNA-Seq of Cajanus cajan: flower bud from India: Kanpur, ICPL 88039B Cognate maintainer line (CML B line), ICPL88039B-Rep2 |
ILLUMINA |
7477971300 bp |
|
|
PRJNA433596 |
Comparative transcriptome profiling of pigeonpea (Cajanus cajan) and its wild relative (Cajanus platycarpus). |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR6785590 |
RNA-Seq of Cajanus cajan: leaf from India: New Delhi, Sample 2 |
ILLUMINA |
3531792170 bp |
|
SRR6785591 |
RNA-Seq of Cajanus cajan: leaf from India: New Delhi, Sample 1 |
ILLUMINA |
3387754524 bp |
|
|
PRJNA435480 |
Cajanus cajan isolate:11A_rep1 | cultivar:AKCM11 Raw sequence reads. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR6780151 |
RNA-Seq of Cajanus cajan: young untreated plant with flower bud from India: New Delhi, R303_rep2 |
ILLUMINA |
8677326322 bp |
|
SRR6780152 |
RNA-Seq of Cajanus cajan: young untreated plant with flower bud from India: New Delhi, R303_rep1 |
ILLUMINA |
5983023254 bp |
|
SRR6780153 |
RNA-Seq of Cajanus cajan: young untreated plant with flower bud from India: New Delhi, 11A_rep2 |
ILLUMINA |
13749896186 bp |
|
SRR6780154 |
RNA-Seq of Cajanus cajan: young untreated plant with flower bud from India: New Delhi, 11A_rep1 |
ILLUMINA |
8389377544 bp |
|
|
PRJNA435649 |
This study was aimed at investigating epigenetic changes in two Pigeonpea inbred lines (cytoplasmic male sterile 11A and fertile 303R) and their fertile F1 hybrid. Their findings provide insights into methylome dynamics and changes in gene expression in Pigeonpea from whole genome-wide point of view. |
Junaid et al., 2018 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR6766045 |
RNA-Seq of Cajanus cajan: 90 days restorer line flowering stage leaf from India, 303R |
ILLUMINA |
8336837839 bp |
|
SRR6766046 |
RNA-Seq of Cajanus cajan: 90 days hybrid flowering stage leaf from India, Hybrid |
ILLUMINA |
4977034249 bp |
|
SRR6766050 |
RNA-Seq of Cajanus cajan: 90 days cms line flowering stage leaf from India, 11A |
ILLUMINA |
7116399934 bp |
|
|
PRJNA437382 |
An environment-sensitive male sterile line has been characterized as a thermosensitive male sterile line responding precisely to day temperature. |
Pazhamala et al., 2020 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR12073759 |
RNA-Seq of Cajanus cajan: 5 months flowering fertile stage 5 plant with anthers desiccated pollen from India, Cajanus sp., F5 - Desiccated pollen (Fertile stage 5) |
ILLUMINA |
3059397499 bp |
|
SRR12073760 |
RNA-Seq of Cajanus cajan: 5 months flowering fertile stage 4 plant with anthers maturing pollen from India, Cajanus sp., F4 - Maturing pollen (Fertile stage 4) |
ILLUMINA |
9958540000 bp |
|
SRR12073761 |
RNA-Seq of Cajanus cajan: 5 months flowering fertile stage 3 plant with anthers microspore from India, Cajanus sp., F3 - Microspore (Fertile stage 3) |
ILLUMINA |
8221386750 bp |
|
SRR12073762 |
RNA-Seq of Cajanus cajan: 5 months flowering fertile stage 2 plant with anthers tetrad from India, Cajanus sp., F2 - Tetrad (Fertile stage 2) |
ILLUMINA |
7628874500 bp |
|
SRR12073763 |
RNA-Seq of Cajanus cajan: 5 months flowering fertile stage 1 plant with anthers pollen mother cells from India, Cajanus sp., F1 -Pollen mother cells (Fertile stage 1) |
ILLUMINA |
6916951750 bp |
|
SRR12073764 |
RNA-Seq of Cajanus cajan: 5 months flowering sterile stage 5 plant with anthers desiccated pollen from India, Cajanus sp., S5 - Desiccated pollen (Sterile stage 5) |
ILLUMINA |
8946377500 bp |
|
SRR12073765 |
RNA-Seq of Cajanus cajan: 5 months flowering sterile stage 4 plant with anthers maturing pollen from India, Cajanus sp., S4 - Maturing pollen (Sterile stage 4) |
ILLUMINA |
9178601750 bp |
|
SRR12073766 |
RNA-Seq of Cajanus cajan: 5 months flowering sterile stage 3 plant with anthers microspore from India, Cajanus sp., S3 - Microspore (Sterile stage 3) |
ILLUMINA |
8986233000 bp |
|
SRR12073767 |
RNA-Seq of Cajanus cajan: 5 months flowering sterile stage 2 plant with anthers tetrad from India, Cajanus sp., S2 - Tetrad (Sterile stage 2) |
ILLUMINA |
7046059750 bp |
|
SRR12073768 |
RNA-Seq of Cajanus cajan: 5 months flowering sterile stage 1 plant with anthers pollen mother cells from India, Cajanus sp., S1 - Pollen mother cells (Sterile stage 1) |
ILLUMINA |
8084236750 bp |
|
|
PRJNA496592 |
Comparative response of pigeonpea and its wild relative against pod borer insect larvae. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR8208902 |
RNA-Seq of Cajanus cajan: leaf1 from India: New Delhi, TTB-7, C2a |
ILLUMINA |
2779165894 bp |
|
SRR8208903 |
RNA-Seq of Cajanus cajan: leaf4 from India: New Delhi, TTB-7, C3b |
ILLUMINA |
2894833114 bp |
|
SRR8208904 |
RNA-Seq of Cajanus cajan: leaf3 from India: New Delhi, TTB-7, C3a |
ILLUMINA |
3076751284 bp |
|
SRR8208909 |
RNA-Seq of Cajanus cajan: leaf6 from India: New Delhi, TTB-7, C4b |
ILLUMINA |
3439294824 bp |
|
SRR8208910 |
RNA-Seq of Cajanus cajan: leaf5 from India: New Delhi, TTB-7, C4a |
ILLUMINA |
3001847260 bp |
|
SRR8208913 |
RNA-Seq of Cajanus cajan: leaf2 from India: New Delhi, TTB-7, C2b |
ILLUMINA |
3326118466 bp |
|
|
PRJNA549058 |
Molecular basis of heterosis in pigeonpea hybrids. |
Sinha et al., 2020 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR9859048 |
RNA-Seq of Cajanus cajan: 15 days seedling stage seedlings from India, ICPH 2740 |
ILLUMINA |
7305719400 bp |
|
SRR9859049 |
RNA-Seq of Cajanus cajan: 15 days seedling stage seedlings from India, ICPR 2740 |
ILLUMINA |
7485192720 bp |
|
SRR9859050 |
RNA-Seq of Cajanus cajan: 15 days seedling stage seedlings from India, ICPR 2671 |
ILLUMINA |
7438659120 bp |
|
SRR9859051 |
RNA-Seq of Cajanus cajan: 15 days seedling stage seedlings from India, ICPA 2047 |
ILLUMINA |
6922480140 bp |
|
SRR9859052 |
RNA-Seq of Cajanus cajan: 15 days seedling stage seedlings from India, ICPA 2043 |
ILLUMINA |
7244756640 bp |
|
SRR9859053 |
RNA-Seq of Cajanus cajan: 15 days seedling stage seedlings from India, ICPH 2671 |
ILLUMINA |
7330869900 bp |
|
|
PRJNA630454 |
Comparative transcriptome analysis between pod borer susceptible cajanus cajan and tolerant cajanus scarabaeoides. |
Njaci et al., 2021 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR11700226 |
RNA-seq of Cajanus cajan: seedling with leaves from Kenya:Nairobi, KAT60/8:6, CT_9_S9 |
ILLUMINA |
482752776 bp |
|
SRR11700227 |
RNA-seq of Cajanus cajan: seedling with leaves from Kenya:Nairobi, KAT60/8:5, CT_8_S8 |
ILLUMINA |
389069549 bp |
|
SRR11700228 |
RNA-seq of Cajanus cajan: seedling with leaves from Kenya:Nairobi, KAT60/8:4, CT_7_S7 |
ILLUMINA |
593766707 bp |
|
SRR11700229 |
RNA-seq of Cajanus cajan: seedling with leaves from Kenya:Nairobi, KAT60/8:3, CT_3_S3 |
ILLUMINA |
299193442 bp |
|
SRR11700232 |
RNA-seq of Cajanus cajan: seedling with leaves from Kenya:Nairobi, KAT60/8:2, CT_2_S2 |
ILLUMINA |
484644117 bp |
|
SRR11700233 |
RNA-seq of Cajanus cajan: seedling with leaves from Kenya:Nairobi, KAT60/8:1, CT_1_S1 |
ILLUMINA |
397771224 bp |
|
|
PRJNA634080 |
Genome-wide transcriptome analysis of the A4-CMS line ICPA 2043 and its maintainer ICPB 2043. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR11816980 |
RNA-seq of Cajanus cajan: stage 2 flower bud from India: Hyderabad, ICPB 2043, ICPB_2043_Stage_II_R2 |
ILLUMINA |
8841968171 bp |
|
SRR11816981 |
RNA-seq of Cajanus cajan: stage 2 flower bud from India: Hyderabad, ICPB 2043, ICPB_2043_Stage_II_R1 |
ILLUMINA |
10849773326 bp |
|
SRR11816982 |
RNA-seq of Cajanus cajan: stage 1 flower bud from India: Hyderabad, ICPB 2043, ICPB_2043_Stage_I_R2 |
ILLUMINA |
12405570843 bp |
|
SRR11816983 |
RNA-seq of Cajanus cajan: stage 1 flower bud from India: Hyderabad, ICPB 2043, ICPB_2043_Stage_I_R1 |
ILLUMINA |
11564588410 bp |
|
SRR11816984 |
RNA-seq of Cajanus cajan: stage 2 flower bud from India: Hyderabad, ICPA 2043, ICPA_2043_Stage_II_R2 |
ILLUMINA |
11796387194 bp |
|
SRR11816985 |
RNA-seq of Cajanus cajan: stage 2 flower bud from India: Hyderabad, ICPA 2043, ICPA_2043_Stage_II_R1 |
ILLUMINA |
8051468207 bp |
|
SRR11816986 |
RNA-seq of Cajanus cajan: stage 1 flower bud from India: Hyderabad, ICPA 2043, ICPA_2043_Stage_I_R2 |
ILLUMINA |
10727998887 bp |
|
SRR11816987 |
RNA-seq of Cajanus cajan: stage 1 flower bud from India: Hyderabad, ICPA 2043, ICPA_2043_Stage_I_R1 |
ILLUMINA |
8928968643 bp |
|
|
PRJNA635234 |
The present study was conducted to investigate the molecular mechanisms underlying the basal thermal tolerance in pigeon pea species through a time-series transcriptome analysis under HS. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR11856663 |
RNA-seq of Cajanus cajan: 4 weeks Heat stress: 3 hrs of stress vegetative plant with leaf from India, ICPL 87119, C.cajan_HS |
ILLUMINA |
18721143300 bp |
|
SRR11856664 |
RNA-seq of Cajanus cajan: 4 weeks Heat stress: 30 mins of stress vegetative plant with leaf from India, ICPL 87119, C.cajan_HS |
ILLUMINA |
14168079600 bp |
|
SRR11856665 |
RNA-seq of Cajanus cajan: 4 weeks Heat stress: Control vegetative plant with leaf from India, ICPL 87119, C.cajan_HS |
ILLUMINA |
20474524800 bp |
|
|
PRJNA637701 |
Comparative transcriptome analysis was performed between two contrasting waterlogging tolerant (JBP-110B) and sensitive (ICP 7035) pigeon pea genotypes for the identification of differentially expressed genes in leaf tissue under control and stress conditions. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR11940026 |
RNA-seq of Cajanus cajan: waterlogging sensitive: Stress vegetative plant with leaf from India, ICP 7035, Cc_1S, C.cajan_S |
ILLUMINA |
21656227324 bp |
|
SRR11940027 |
RNA-seq of Cajanus cajan: waterlogging sensitive: Control vegetative plant with leaf from India, ICP 7035, Cc_0S, C.cajan_S |
ILLUMINA |
18012335188 bp |
|
SRR11940028 |
RNA-seq of Cajanus cajan: waterlogging tolerant: Stress vegetative plant with leaf from India, JBP-110B, Cc_1T, C.cajan_T |
ILLUMINA |
17357431276 bp |
|
SRR11940029 |
RNA-seq of Cajanus cajan: waterlogging tolerant: Control vegetative plant with leaf from India, JBP-110B, Cc_0T, C.cajan_T |
ILLUMINA |
15423220030 bp |
|
|
PRJNA665784 |
The study was conducted to investigate the molecular mechanisms underlying the photoperiod insensitivity in pigeon pea species through a transcriptome analysis of photoperiod sensitive (MAL3) and photoperiod insensitive (ICP20338) genotypes of pigeon pea grown under short day (SD) and long day (LD) condition. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR12717514 |
RNA-seq of Cajanus cajan: 135 days grown under long day photoperoid reproductive flowering stage leaf from India, MAL3, MAL3_LD |
ILLUMINA |
18440184600 bp |
|
SRR12717515 |
RNA-seq of Cajanus cajan: 135 days grown under short day photoperoid reproductive flowering stage leaf from India, MAL3, MAL3_SD |
ILLUMINA |
20674254600 bp |
|
SRR12717516 |
RNA-seq of Cajanus cajan: 50 days grown under long day photoperoid reproductive flowering stage leaf from India, ICP20338, ICP20338_LD |
ILLUMINA |
18135089700 bp |
|
SRR12717517 |
RNA-seq of Cajanus cajan: 50 days grown under short day photoperoid reproductive flowering stage leaf from India, ICP20338, ICP20338_SD |
ILLUMINA |
19634766000 bp |
|
|
PRJNA718971 |
In this study, two pigeonpea 11A and 303R lines were crossed and the resulting F1 hybrid were subjected to bisulfite sequencing for methylome characterization at single base resolution. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR14149935 |
RNA-seq of Cajanus cajan: 3 month reproductive stage plant with bud from India, Cc_3-2, Pigeonpea |
ILLUMINA |
4575014752 bp |
|
SRR14149936 |
RNA-seq of Cajanus cajan: 3 month reproductive stage plant with bud from India, Cc_3-1, Pigeonpea |
ILLUMINA |
5134517702 bp |
|
|
PRJNA752250 |
The present study was conducted to investigate the molecular mechanisms underlying the floral transition in pigeonpea species through transcriptome analysis of ICPL 20338 genotypes. |
Kumar et al., 2022 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR20218648 |
RNA-seq of Cajanus cajan: reproductive stage buds from India, cv. ICPL 20338, Cc_Reproductive_meristem |
ILLUMINA |
29496971784 bp |
|
SRR20218649 |
RNA-seq of Cajanus cajan: reproductive stage leaves from India, cv. ICPL 20338, Cc_Reproductive_leaves |
ILLUMINA |
32998974052 bp |
|
SRR20218650 |
RNA-seq of Cajanus cajan: vegetative stage shoot apical meristem from India, cv. ICPL 20338, Cc_Vegetative_meristem |
ILLUMINA |
27077089272 bp |
|
SRR20218651 |
RNA-seq of Cajanus cajan: vegetative stage leaves from India, cv. ICPL 20338, Cc_Vegetative_leaves |
ILLUMINA |
33740368952 bp |
|
|
PRJNA848939 |
Pigeon pea promotes flavonoid biogenesis in response to melatonin induction. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR19663804 |
RNA-seq of Cajanus cajan: 1 month treat with melatonin for 72 h\, group 3 plant with root from China: Beijing, ICPL87119, R72h_3 |
ILLUMINA |
5794660800 bp |
|
SRR19663805 |
RNA-seq of Cajanus cajan: 1 month treat with melatonin for 72 h\, group 2 plant with root from China: Beijing, ICPL87119, R72h_2 |
ILLUMINA |
6336940500 bp |
|
SRR19663806 |
RNA-seq of Cajanus cajan: 1 month treat with melatonin for 72 h\, group 1 plant with root from China: Beijing, ICPL87119, R72h_1 |
ILLUMINA |
7165613100 bp |
|
SRR19663807 |
RNA-seq of Cajanus cajan: 1 month treat with melatonin for 12 h\, group 3 plant with root from China: Beijing, ICPL87119, D12h_3 |
ILLUMINA |
6679885200 bp |
|
SRR19663808 |
RNA-seq of Cajanus cajan: 1 month treat with melatonin for 12 h\, group 2 plant with root from China: Beijing, ICPL87119, D12h_2 |
ILLUMINA |
7247472300 bp |
|
SRR19663809 |
RNA-seq of Cajanus cajan: 1 month treat with melatonin for 12 h\, group 1 plant with root from China: Beijing, ICPL87119, D12h_1 |
ILLUMINA |
6367812000 bp |
|
SRR19663810 |
RNA-seq of Cajanus cajan: 1 month treat with melatonin for 0 h\, group 3 plant with root from China: Beijing, ICPL87119, R0h_3 |
ILLUMINA |
6150033000 bp |
|
SRR19663811 |
RNA-seq of Cajanus cajan: 1 month treat with melatonin for 0 h\, group 2 plant with root from China: Beijing, ICPL87119, R0h_2 |
ILLUMINA |
6034596000 bp |
|
|
PRJNA849379 |
Cajanus cajan transcriptome or gene expression, cajanus treat with melatonin for 0 h, group 1. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR19665649 |
RNA-seq of Cajanus cajan: 1 month treat with melatonin for 0 h\, group 1 plant with root from China: Beijing, ICPL87119, R0h_1 |
ILLUMINA |
6169255500 bp |
|
|