Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJEB35419 Transcriptomic analysis of cocoa (Theobroma cacao L.) response to water deficit. -
12
Library Title Platform Total Base VCF File
ERR3665546 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Estacion Experimental Tropical 8, E-MTAB-8525:EET8_R1_C ILLUMINA 9490329600 bp
ERR3665547 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Estacion Experimental Tropical 8, E-MTAB-8525:EET8_R2_C ILLUMINA 8325801600 bp
ERR3665548 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Estacion Experimental Tropical 8, E-MTAB-8525:EET8_R3_C ILLUMINA 8630269800 bp
ERR3665549 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Trinidad Selection Hybrid 565, E-MTAB-8525:TSH565_R1_C ILLUMINA 7455400500 bp
ERR3665550 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Trinidad Selection Hybrid 565, E-MTAB-8525:TSH565_R2_C ILLUMINA 8436375300 bp
ERR3665551 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Trinidad Selection Hybrid 565, E-MTAB-8525:TSH565_R3_C ILLUMINA 9320403900 bp
ERR3665552 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage the day 52 of drought treatment plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Estacion Experimental Tropical 8, E-MTAB-8525:EET8_R1_D ILLUMINA 8593925100 bp
ERR3665553 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage the day 52 of drought treatment plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Estacion Experimental Tropical 8, E-MTAB-8525:EET8_R2_D ILLUMINA 8450864400 bp
ERR3665554 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage the day 52 of drought treatment plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Estacion Experimental Tropical 8, E-MTAB-8525:EET8_R3_D ILLUMINA 9128401200 bp
ERR3665555 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage the day 52 of drought treatment plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Trinidad Selection Hybrid 565, E-MTAB-8525:TSH565_R1_D ILLUMINA 11353402500 bp
ERR3665556 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage the day 52 of drought treatment plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Trinidad Selection Hybrid 565, E-MTAB-8525:TSH565_R2_D ILLUMINA 9118054500 bp
ERR3665557 RNA-Seq of Theobroma cacao: wild type genotype leaf production stage the day 52 of drought treatment plant with third or fourth leaf from Pontificia universidad Javeriana\, Departamento de Biologia\, Facultad de Ciencias.Bogota\, Colombia, Trinidad Selection Hybrid 565, E-MTAB-8525:TSH565_R3_D ILLUMINA 7967848800 bp
PRJNA314774 Evolution of Theobroma cacao and domestication. Leaves and flowers RNAseq isolated for 10 Theobroma cacao cultivars and 10 Theobroma cacao wild genotypes. -
20
Library Title Platform Total Base VCF File
SRR3217276 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Ecuador: local selection, CCN51, TC_CIRAD_KC1 ILLUMINA 2844857600 bp
SRR3217277 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Trinidad and Tobago: Trinidad\, local selection, TSH1076, TC_CIRAD_KC2 ILLUMINA 3170098200 bp
SRR3217278 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from French Guiana: wild, GU230B, TC_CIRAD_KS1 ILLUMINA 3755203800 bp
SRR3217279 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from French Guiana: wild, GU139A, TC_CIRAD_KS2 ILLUMINA 3688591400 bp
SRR3217280 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Ecuador: wild, LCTEEN195, TC_CIRAD_KS3 ILLUMINA 2554555000 bp
SRR3217281 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Ecuador: wild, LCTEEN218, TC_CIRAD_KS4 ILLUMINA 4281167800 bp
SRR3217282 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Ecuador: wild, LCTEEN332, TC_CIRAD_KS5 ILLUMINA 4001608800 bp
SRR3217283 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Ecuador: wild, LCTEEN83/S8, TC_CIRAD_KS6 ILLUMINA 3041866400 bp
SRR3217284 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Colombia: Amazon valley, SPA10, TC_CIRAD_KS7 ILLUMINA 2744094600 bp
SRR3217292 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Ecuador: rio Morona, MO76, TC_CIRAD_KS8 ILLUMINA 2533780200 bp
SRR3217294 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower, PA120, TC_CIRAD_KS9 ILLUMINA 2096893200 bp
SRR3217297 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower, NA230, TC_CIRAD_KS10 ILLUMINA 2856320800 bp
SRR3217298 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Brazil: local selection, Catongo, TC_CIRAD_KC3 ILLUMINA 2012492400 bp
SRR3217299 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower, SCA6, TC_CIRAD_KC4 ILLUMINA 2017995600 bp
SRR3217301 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower, IMC67, TC_CIRAD_KC5 ILLUMINA 2219985400 bp
SRR3217304 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower, P7, TC_CIRAD_KC6 ILLUMINA 2945016600 bp
SRR3217315 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower, PA150, TC_CIRAD_KC7 ILLUMINA 4120692400 bp
SRR3217317 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Ecuador: local selection, EET162, TC_CIRAD_KC8 ILLUMINA 2811327400 bp
SRR3217318 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Trinidad and Tobago: Trinidad\, local selection, ICS1, TC_CIRAD_KC9 ILLUMINA 2939830200 bp
SRR3217319 RNA-Seq of Theobroma cacao: adult plant with mix leaf-flower from Samoa: local selection, LAFI-7, TC_CIRAD_KC10 ILLUMINA 3007303400 bp
PRJNA326055 Raw RNA sequencing data of several cultivated crops and their wild relatives and close outgroups in order to make comparative analyses of the effect of domestication on genome evolution in different crop species. Sarah et al., 2016
10
Library Title Platform Total Base VCF File
SRR9203098 RNA-Seq of Theobroma cacao: 80 % inflorescence/20 % leaves from Peru, PA120, KS9 ILLUMINA 2096893200 bp
SRR9203099 RNA-Seq of Theobroma cacao: 80 % inflorescence/20 % leaves from Peru, NA230, KS10 ILLUMINA 2856320800 bp
SRR9203100 RNA-Seq of Theobroma cacao: 80 % inflorescence/20 % leaves from Ecuador, LCTEEN195, KS3 ILLUMINA 2554555000 bp
SRR9203101 RNA-Seq of Theobroma cacao: 80 % inflorescence/20 % leaves from Ecuador, LCTEEN218, KS4 ILLUMINA 4281167800 bp
SRR9203102 RNA-Seq of Theobroma cacao: 80 % inflorescence/20 % leaves from French Guiana, GU230B, KS1 ILLUMINA 3755203800 bp
SRR9203103 RNA-Seq of Theobroma cacao: 80 % inflorescence/20 % leaves from French Guiana, GU139A, KS2 ILLUMINA 3688591400 bp
SRR9203104 RNA-Seq of Theobroma cacao: 80 % inflorescence/20 % leaves from Colombia, SPA10, KS7 ILLUMINA 2744094600 bp
SRR9203105 RNA-Seq of Theobroma cacao: 80 % inflorescence/20 % leaves from Peru, MO76, KS8 ILLUMINA 2533780200 bp
SRR9203106 RNA-Seq of Theobroma cacao: 80 % inflorescence/20 % leaves from Ecuador, LCTEEN332, KS5 ILLUMINA 4001608800 bp
SRR9203107 RNA-Seq of Theobroma cacao: 80 % inflorescence/20 % leaves from Ecuador, LCTEEN83/S8, KS6 ILLUMINA 3041866400 bp
PRJNA448219 Theobroma cacao Raw sequence reads, cacao seed oil content. -
16
Library Title Platform Total Base VCF File
SRR6928365 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS57-126_2, cacao seed ILLUMINA 620812850 bp
SRR6928366 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS57-126_1, cacao seed ILLUMINA 575872402 bp
SRR6928367 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS57-105_2, cacao seed ILLUMINA 622440140 bp
SRR6928368 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS57-105_1, cacao seed ILLUMINA 622366836 bp
SRR6928369 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS57-168_2, cacao seed ILLUMINA 622271482 bp
SRR6928370 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS57-168_1, cacao seed ILLUMINA 493451315 bp
SRR6928371 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS57-147_2, cacao seed ILLUMINA 622256145 bp
SRR6928372 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS57-147_1, cacao seed ILLUMINA 546268023 bp
SRR6928373 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS42-105_2, cacao seed ILLUMINA 622737080 bp
SRR6928374 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS42-105_1, cacao seed ILLUMINA 504674177 bp
SRR6928375 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS42-126_2, cacao seed ILLUMINA 621824553 bp
SRR6928376 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS42-126_1, cacao seed ILLUMINA 562718401 bp
SRR6928377 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS42-147_2, cacao seed ILLUMINA 622624772 bp
SRR6928378 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS42-147_1, cacao seed ILLUMINA 561974630 bp
SRR6928379 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS42-168_2, cacao seed ILLUMINA 622163192 bp
SRR6928380 RNA-Seq of Theobroma cacao: 6 years plant with seed from China: wanning, TAS42-168_1, cacao seed ILLUMINA 625526993 bp
PRJNA471714 Transcriptomic analyses of cacao cell suspensions in light and dark provide target genes for controlled flavonoid production (cacao). -
36
Library Title Platform Total Base VCF File
SRR7172356 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143803 ILLUMINA 2009314500 bp
SRR7172357 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143804 ILLUMINA 2661825400 bp
SRR7172358 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143805 ILLUMINA 2033154100 bp
SRR7172359 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143806 ILLUMINA 2382674400 bp
SRR7172360 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143807 ILLUMINA 2015979200 bp
SRR7172361 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143808 ILLUMINA 1773883800 bp
SRR7172362 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143809 ILLUMINA 1892455200 bp
SRR7172363 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143810 ILLUMINA 2248713000 bp
SRR7172364 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143811 ILLUMINA 2475120300 bp
SRR7172365 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143812 ILLUMINA 2483345300 bp
SRR7172366 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143813 ILLUMINA 2321600600 bp
SRR7172367 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143814 ILLUMINA 1971357500 bp
SRR7172368 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143815 ILLUMINA 2071655100 bp
SRR7172369 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143816 ILLUMINA 1829402900 bp
SRR7172370 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143817 ILLUMINA 1790394700 bp
SRR7172371 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143818 ILLUMINA 1803494300 bp
SRR7172372 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143819 ILLUMINA 1691362600 bp
SRR7172373 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143820 ILLUMINA 1976804200 bp
SRR7172374 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143821 ILLUMINA 1900936600 bp
SRR7172375 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143822 ILLUMINA 1843704300 bp
SRR7172376 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143823 ILLUMINA 2025215600 bp
SRR7172377 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143824 ILLUMINA 1989100200 bp
SRR7172378 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143825 ILLUMINA 1865774100 bp
SRR7172379 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143826 ILLUMINA 1888929900 bp
SRR7172380 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143827 ILLUMINA 2199671800 bp
SRR7172381 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143828 ILLUMINA 2074185700 bp
SRR7172382 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143829 ILLUMINA 1845572900 bp
SRR7172383 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143830 ILLUMINA 2497238900 bp
SRR7172384 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143831 ILLUMINA 2273568100 bp
SRR7172385 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143832 ILLUMINA 1939747500 bp
SRR7172386 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143833 ILLUMINA 1750844900 bp
SRR7172387 RNA-Seq of Theobroma cacao: white treatment plant with cell suspensions, GSM3143834 ILLUMINA 2085076900 bp
SRR7172388 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143835 ILLUMINA 1782158500 bp
SRR7172389 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143836 ILLUMINA 1694387900 bp
SRR7172390 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143837 ILLUMINA 1800524100 bp
SRR7172391 RNA-Seq of Theobroma cacao: dark treatment plant with cell suspensions, GSM3143838 ILLUMINA 1711849800 bp
PRJNA51633 Theobroma cacao Matina 1-6 genome sequencing project. Motamayor et al., 2013
16
Library Title Platform Total Base VCF File
SRR850922 RNA-Seq of Theobroma cacao: leaves, mixed S. American origins, mixed cultivars, Illumina mRNA, Theobroma cacao leaf RNAs set 1 ILLUMINA 15073173576 bp
SRR851125 RNA-Seq of Theobroma cacao: multiple mixed plant with pistils dissected from flowers from Costa rica, CATIE, Mixed cultivars, ca4, Theobroma cacao pistil RNAs set 1 ILLUMINA 2021082920 bp
SRR851126 RNA-Seq of Theobroma cacao: multiple mixed plant with pistils dissected from flowers from Costa rica, CATIE, Mixed cultivars, ca5, Theobroma cacao pistil RNAs set 1 ILLUMINA 2833339084 bp
SRR851127 RNA-Seq of Theobroma cacao: multiple mixed plant with pistils dissected from flowers from Costa rica, CATIE, Mixed cultivars, ca6, Theobroma cacao pistil RNAs set 1 ILLUMINA 1627121200 bp
SRR851128 RNA-Seq of Theobroma cacao: multiple mixed plant with pistils dissected from flowers from Costa rica, CATIE, Mixed cultivars, ca7, Theobroma cacao pistil RNAs set 1 ILLUMINA 1964127848 bp
SRR851129 RNA-Seq of Theobroma cacao: multiple mixed plant with pistils dissected from flowers from Costa rica, CATIE, Mixed cultivars, ca8, Theobroma cacao pistil RNAs set 1 ILLUMINA 2604142280 bp
SRR851130 RNA-Seq of Theobroma cacao: multiple mixed plant with pistils dissected from flowers from Costa rica, CATIE, Mixed cultivars, ca9, Theobroma cacao pistil RNAs set 1 ILLUMINA 3172768892 bp
SRR851131 RNA-Seq of Theobroma cacao: multiple mixed plant with pistils dissected from flowers from Costa rica, CATIE, Mixed cultivars, ca10, Theobroma cacao pistil RNAs set 1 ILLUMINA 2179503948 bp
SRR851885 RNA-Seq of Theobroma cacao: leaves, Matina 1-6, Ma 2, Theobroma cacao Matina 1-6 leaf ILLUMINA 1683883080 bp
SRR851105 RNA-Seq of Theobroma cacao: multiple mixed plant with pistils dissected from flowers from Costa rica, CATIE, Mixed cultivars, ca2, Theobroma cacao pistil RNAs set 1 ILLUMINA 1989954112 bp
SRR851238 RNA-Seq of Theobroma cacao: leaves, Matina 1-6, pool A, B , C, Theobroma cacao Matina 1-6 leaf ILLUMINA 6958901268 bp
SRR851813 RNA-Seq of Theobroma cacao: leaves, Matina 1-6, pool A, B , C, Theobroma cacao Matina 1-6 leaf ILLUMINA 8724873636 bp
SRR851814 RNA-Seq of Theobroma cacao: leaves, Matina 1-6, pool A, B , C, Theobroma cacao Matina 1-6 leaf ILLUMINA 8587126872 bp
SRR851884 RNA-Seq of Theobroma cacao: leaves, Matina 1-6, Ma leaf 1, Theobroma cacao Matina 1-6 leaf ILLUMINA 1037537208 bp
SRR851888 RNA-Seq of Theobroma cacao: multiple mixed plant with pistils dissected from flowers from Costa rica, CATIE, Mixed cultivars, ca1, Theobroma cacao pistil RNAs set 1 ILLUMINA 2242157156 bp
SRR851908 RNA-Seq of Theobroma cacao: multiple mixed plant with pistils dissected from flowers from Costa rica, CATIE, Mixed cultivars, ca3, Theobroma cacao pistil RNAs set 1 ILLUMINA 24819078288 bp
PRJNA613342 The flavonoid metabolites profiles and flavonoid biosynthetic genes expressions in the pod exocarps of light green pod, green pod, and mauve pod were determined. Li et al., 2021
9
Library Title Platform Total Base VCF File
SRR11389076 RNA-Seq of Theobroma cacao: adult tree 18 weeks after pollination pods light green cacao pod husks outer 1–3 mm layer exocarps from Xinglong Tropical Botanical Garden China: Wanning, TAS 410, GW3 ILLUMINA 7060985700 bp
SRR11389077 RNA-Seq of Theobroma cacao: adult tree 18 weeks after pollination pods light green cacao pod husks outer 1–3 mm layer exocarps from Xinglong Tropical Botanical Garden China: Wanning, TAS 410, GW2 ILLUMINA 6542274600 bp
SRR11389078 RNA-Seq of Theobroma cacao: adult tree 18 weeks after pollination pods light green cacao pod husks outer 1–3 mm layer exocarps from Xinglong Tropical Botanical Garden China: Wanning, TAS 410, GW1 ILLUMINA 7009732500 bp
SRR11389079 RNA-Seq of Theobroma cacao: adult tree 18 weeks after pollination pods mauve cacao pod husks outer 1–3 mm layer exocarps from Xinglong Tropical Botanical Garden China: Wanning, TAS 168, PF3 ILLUMINA 6697725300 bp
SRR11389080 RNA-Seq of Theobroma cacao: adult tree 18 weeks after pollination pods mauve cacao pod husks outer 1–3 mm layer exocarps from Xinglong Tropical Botanical Garden China: Wanning, TAS 168, PF2 ILLUMINA 6482910000 bp
SRR11389081 RNA-Seq of Theobroma cacao: adult tree 18 weeks after pollination pods mauve cacao pod husks outer 1–3 mm layer exocarps from Xinglong Tropical Botanical Garden China: Wanning, TAS 168, PF1 ILLUMINA 7003630800 bp
SRR11389082 RNA-Seq of Theobroma cacao: adult tree 18 weeks after pollination pods green cacao pod husks outer 1–3 mm layer exocarps from Xinglong Tropical Botanical Garden China: Wanning, TAS 166, GF3 ILLUMINA 6520737300 bp
SRR11389083 RNA-Seq of Theobroma cacao: adult tree 18 weeks after pollination pods green cacao pod husks outer 1–3 mm layer exocarps from Xinglong Tropical Botanical Garden China: Wanning, TAS 166, GF2 ILLUMINA 6961896000 bp
SRR11389084 RNA-Seq of Theobroma cacao: adult tree 18 weeks after pollination pods green cacao pod husks outer 1–3 mm layer exocarps from Xinglong Tropical Botanical Garden China: Wanning, TAS 166, GF1 ILLUMINA 7397772000 bp
PRJNA714293 Theobroma cacao RNA reads. -
3
Library Title Platform Total Base VCF File
SRR13960577 RNA-Seq of Theobroma cacao: CA mixed tissue from China, 3, CA ILLUMINA 53057856572 bp
SRR13960578 RNA-Seq of Theobroma cacao: CA mixed tissue from China, 2, CA ILLUMINA 53014690729 bp
SRR13960579 RNA-Seq of Theobroma cacao: CA mixed tissue from China, 1, CA ILLUMINA 10202435889 bp
PRJNA742476 Cacao cell cultures at bioreactor are exposed to different light wavelengths and the gene expression profile is measured under a time course experiment. Gallego et al., 2021
12
Library Title Platform Total Base VCF File
SRR15010977 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 14 days cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B3, BIOA cell line ILLUMINA 2100540100 bp
SRR15010978 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 0 day cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B3, BIOA cell line ILLUMINA 1967076400 bp
SRR15010979 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 28 days cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B2, BIOA cell line ILLUMINA 2017928200 bp
SRR15010980 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 15 days cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B2, BIOA cell line ILLUMINA 2122034300 bp
SRR15010981 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 14 days cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B2, BIOA cell line ILLUMINA 2339011500 bp
SRR15010982 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 0 day cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B2, BIOA cell line ILLUMINA 1771367500 bp
SRR15010983 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 28 days cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B1, BIOA cell line ILLUMINA 1920703000 bp
SRR15010984 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 15 days cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B1, BIOA cell line ILLUMINA 1984110000 bp
SRR15010985 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 28 days cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B3, BIOA cell line ILLUMINA 1923309100 bp
SRR15010986 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 15 days cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B3, BIOA cell line ILLUMINA 2003436200 bp
SRR15010987 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 14 days cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B1, BIOA cell line ILLUMINA 2128519374 bp
SRR15010988 RNA-Seq of Theobroma cacao: BIO trinitario mature plant with 0 day cotyledon from Colombia: San Vicente de Chucur- Santander\, (06 53' 00"N; 73 24' 50" W), ICS95, B1, BIOA cell line ILLUMINA 1649929400 bp

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