Species Info.

Omics Data

Omics Analysis

Seq. Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA691352 RNAseq-based transcriptomic responses to heat stress in Vaccinium darrowii. Callwood et al., 2021
6
Library Title Platform Total Base VCF File
SRR13433406 RNA-Seq of Vaccinium darrowii: exposed to heat stress at 45 °C for 9h treatment seedling with leaf from USA, D2_9h, Vaccinium_darrowii ILLUMINA 1797883352 bp
SRR13433407 RNA-Seq of Vaccinium darrowii: exposed to heat stress at 45 °C for 9h treatment seedling with leaf from USA, D1_9h, Vaccinium_darrowii ILLUMINA 1643954615 bp
SRR13433408 RNA-Seq of Vaccinium darrowii: exposed to heat stress at 45 °C for 6h treatment seedling with leaf from USA, D2_6h, Vaccinium_darrowii ILLUMINA 1621729114 bp
SRR13433409 RNA-Seq of Vaccinium darrowii: exposed to heat stress at 45 °C for 6h treatment seedling with leaf from USA, D1_6h, Vaccinium_darrowii ILLUMINA 1896812946 bp
SRR13433410 RNA-Seq of Vaccinium darrowii: no treatment seedling with leaf from USA, D2_0h, Vaccinium_darrowii ILLUMINA 1817772329 bp
SRR13433411 RNA-Seq of Vaccinium darrowii: no treatment seedling with leaf from USA, D1_0h, Vaccinium_darrowii ILLUMINA 1716271065 bp
PRJNA706655 Development of a high-quality reference genome sequence of the evergreen blueberry Vaccinium darrowii. Principal haplotype Yu et al., 2021
19
Library Title Platform Total Base VCF File
SRR13865240 RNA-Seq of Vaccinium darrowii: coloring (pink) berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 6, S-12 ILLUMINA 5656398600 bp
SRR13865241 RNA-Seq of Vaccinium darrowii: coloring (pink) berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 5, S-11 ILLUMINA 7547402400 bp
SRR13865242 RNA-Seq of Vaccinium darrowii: green berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 2, S-2 ILLUMINA 8380251000 bp
SRR13865243 RNA-Seq of Vaccinium darrowii: green berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 1, S-1 ILLUMINA 6252948600 bp
SRR13865244 RNA-Seq of Vaccinium darrowii: coloring (pink) berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 4, S-10 ILLUMINA 6863969400 bp
SRR13865245 RNA-Seq of Vaccinium darrowii: coloring (pink) berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 3, S-9 ILLUMINA 5778579000 bp
SRR13865246 RNA-Seq of Vaccinium darrowii: coloring (pink) berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 2, S-8 ILLUMINA 6211689000 bp
SRR13865247 RNA-Seq of Vaccinium darrowii: coloring (pink) berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 1, S-7 ILLUMINA 7100715600 bp
SRR13865248 RNA-Seq of Vaccinium darrowii: green berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 6, S-6 ILLUMINA 6628289400 bp
SRR13865249 RNA-Seq of Vaccinium darrowii: green berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 5, S-5 ILLUMINA 5613851100 bp
SRR13865250 RNA-Seq of Vaccinium darrowii: green berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 4, S-4 ILLUMINA 6518966100 bp
SRR13865251 RNA-Seq of Vaccinium darrowii: mixed three stages berry FROM USA:Mississippi, NJ8810/NJ8812, Berry Isoseq PACBIO_SMRT 168337591181 bp
SRR13865254 RNA-Seq of Vaccinium darrowii: green berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 3, S-3 ILLUMINA 6385066200 bp
SRR13865257 RNA-Seq of Vaccinium darrowii: ripening berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 6, S-18 ILLUMINA 6791642700 bp
SRR13865258 RNA-Seq of Vaccinium darrowii: ripening berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 5, S-17 ILLUMINA 5745928800 bp
SRR13865259 RNA-Seq of Vaccinium darrowii: ripening berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 4, S-16 ILLUMINA 6434286000 bp
SRR13865260 RNA-Seq of Vaccinium darrowii: ripening berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 3, S-15 ILLUMINA 7459618800 bp
SRR13865261 RNA-Seq of Vaccinium darrowii: ripening berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 2, S-14 ILLUMINA 7599758700 bp
SRR13865262 RNA-Seq of Vaccinium darrowii: ripening berry FROM USA:Mississippi, NJ8810/NJ8807, biological replicate 1, S-13 ILLUMINA 6466936500 bp
PRJNA758745 Performed RNA-seq analysis with tissues from three different tissues, fruit skin, flesh and leaves. Cui et al., 2022
9
Library Title Platform Total Base VCF File
SRR15673715 RNA-Seq of Vaccinium darrowii: 4 months and 2 years plant with leaf from USA: Florida, Camp, leaf_rep3 ILLUMINA 7834364470 bp
SRR15673716 RNA-Seq of Vaccinium darrowii: 4 months and 2 years plant with leaf from USA: Florida, Camp, leaf_rep2 ILLUMINA 8266507253 bp
SRR15673717 RNA-Seq of Vaccinium darrowii: 4 months and 2 years plant with leaf from USA: Florida, Camp, leaf_rep1 ILLUMINA 7357934923 bp
SRR15673718 RNA-Seq of Vaccinium darrowii: 4 months and 2 years plant with skin from USA: Florida, Camp, Skin_rep3 ILLUMINA 11312854568 bp
SRR15673719 RNA-Seq of Vaccinium darrowii: 4 months and 2 years plant with skin from USA: Florida, Camp, Skin_rep2 ILLUMINA 9819055476 bp
SRR15673720 RNA-Seq of Vaccinium darrowii: 4 months and 2 years plant with skin from USA: Florida, Camp, Skin_rep1 ILLUMINA 8551734472 bp
SRR15673721 RNA-Seq of Vaccinium darrowii: 4 months and 2 years plant with flesh from USA: Florida, Camp, Flesh_rep3 ILLUMINA 11560375430 bp
SRR15673722 RNA-Seq of Vaccinium darrowii: 4 months and 2 years plant with flesh from USA: Florida, Camp, Flesh_rep2 ILLUMINA 9017011002 bp
SRR15673723 RNA-Seq of Vaccinium darrowii: 4 months and 2 years plant with flesh from USA: Florida, Camp, Flesh_rep1 ILLUMINA 8970921795 bp

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