Omics-Seq

Project

Bioproject

Description

Publication

GVCF File

Library Num.

Researchers conducted transcriptome sequencing of PRSV resistant transgenic papaya SunUp and its PRSV susceptible progenitor Sunset to compare the transcriptional changes in young healthy leaves prior to infection with PRSV.

Library	Title	Platform	Total Base	VCF File
SRR3509576	RNA-Seq of Carica papaya: 4 months vegetative growth stage inbred lines hermaphrodite health plant with leaf from China: Fujian, Sunset, SS-NP	ILLUMINA	27268556970 bp
SRR3509577	RNA-Seq of Carica papaya: 4 months vegetative growth stage inbred lines hermaphrodite health plant with leaf from China: Fujian, SunUp, SU-NP	ILLUMINA	24479136084 bp

PRJNA321846

Transcriptome analysis of male-to-hermaphrodite sex reversal induced by low temperature in papaya.

Library	Title	Platform	Total Base	VCF File
SRR3537989	RNA-Seq of Carica papaya: 1 year plant with pistillode from China: fuzhou, Zhong Huang, NMF	ILLUMINA	3683037922 bp
SRR3538468	RNA-Seq of Carica papaya: 1 year plant with developed pistils from China: fuzhou, Zhong Huang, TSF	ILLUMINA	3684816734 bp

PRJNA381300

fruitENCODE: An encyclopedia of DNA elements for fruit ripening. The goal of this fruit ENCODE project is to provide a comprehensive annotation of functional elements in not just the tomato genome, but a wide-range of fleshy fruit species in order to examine the diversity of fruit ripening processes.

Lü et al., 2018

Library	Title	Platform	Total Base
SRR5405093	RNA-Seq of Carica papaya: stage4 of 4 (from immature to ripe) fruit flesh from a plantation associated with South China Agricultural university in China: Guangzhou, Tainong1, Papaya_S4_RNA-seq_1	ILLUMINA	1373373900 bp
SRR5405094	RNA-Seq of Carica papaya: stage3 of 4 (from immature to ripe) fruit flesh from a plantation associated with South China Agricultural university in China: Guangzhou, Tainong1, Papaya_S3_RNA-seq_1	ILLUMINA	2807379300 bp
SRR5405095	RNA-Seq of Carica papaya: stage2 of 4 (from immature to ripe) fruit flesh from a plantation associated with South China Agricultural university in China: Guangzhou, Tainong1, Papaya_S2_RNA-seq_1	ILLUMINA	2687049300 bp
SRR5405096	RNA-Seq of Carica papaya: stage1 of 4 (from immature to ripe) fruit flesh from a plantation associated with South China Agricultural university in China: Guangzhou, Tainong1, Papaya_S1_RNA-seq_1	ILLUMINA	1091726100 bp
SRR5405097	RNA-Seq of Carica papaya: leaf from a plantation associated with South China Agricultural university in China: Guangzhou, Tainong1, Papaya_leaf_RNA-seq_1	ILLUMINA	1346224500 bp
SRR6320462	RNA-Seq of Carica papaya: stage1 of 4 (from immature to ripe) fruit flesh from a plantation associated with South China Agricultural university in China: Guangzhou, Tainong1, Papaya_S1_RNA-seq_2	ILLUMINA	2357405700 bp
SRR6320463	RNA-Seq of Carica papaya: stage4 of 4 (from immature to ripe) fruit flesh from a plantation associated with South China Agricultural university in China: Guangzhou, Tainong1, Papaya_S4_RNA-seq_2	ILLUMINA	2545004400 bp
SRR6320584	RNA-Seq of Carica papaya: leaf from a plantation associated with South China Agricultural university in China: Guangzhou, Tainong1, Papaya_leaf_RNA-seq_2	ILLUMINA	1049104800 bp

PRJNA427413

The study goals revealed the transcriptome data of 0.2 cm diameter flowers within different sex-types of carica papaya.

Library	Title	Platform	Total Base
SRR6416941	RNA-Seq of Carica papaya: hermaphrodite plant with leave, sunrise taichung, ap1	ILLUMINA	4493098120 bp
SRR6416942	RNA-Seq of Carica papaya: female plant with leave, Sunrise, ap2	ILLUMINA	3895101158 bp
SRR6416943	RNA-Seq of Carica papaya: male plant with leave, sunrise taichung, ap3	ILLUMINA	4069298484 bp
SRR6416944	RNA-Seq of Carica papaya: hermaphrodite plant with leave, Sunrise, ap4	ILLUMINA	3706718584 bp
SRR6416945	RNA-Seq of Carica papaya: male plant with leave, Sunrise, ap5	ILLUMINA	4448954252 bp

PRJNA449965

Transcriptome analysis of the flesh and peel of papaya fruit. Exploring the differential accumulation of carotenoids in the yellow peel and red flesh of papaya

Giacomelli Soares et al., 2021

Library	Title	Platform	Total Base
SRR6996526	RNA-Seq of Carica papaya: 1 year plant with peel of green stage papaya fruit from China: Zhangzhou, cv. ''Daqing No.10'', PE1	ILLUMINA	6884406600 bp
SRR6996527	RNA-Seq of Carica papaya: 1 year plant with peel of color break stage papaya fruit from China: Zhangzhou, cv. ''Daqing No.10'', PE2	ILLUMINA	6435222600 bp
SRR6996528	RNA-Seq of Carica papaya: 1 year plant with flesh of green stage papaya fruit from China: Zhangzhou, cv. ''Daqing No.10'', FL1	ILLUMINA	6861905400 bp
SRR6996529	RNA-Seq of Carica papaya: 1 year plant with flesh of color break stage papaya fruit from China: Zhangzhou, cv. ''Daqing No.10'', FL2	ILLUMINA	8025602700 bp

PRJNA470602

Transcriptome of leaves, sap, and roots of papaya plant under well-watered condition and drought stress

Gamboa-Tuz et al., 2018

Library	Title	Platform	Total Base
SRR7145699	RNA-Seq of Carica papaya: 3 months plant with 10 days of drought Rep R-10a root, R-10a	ILLUMINA	4939327444 bp
SRR7145700	RNA-Seq of Carica papaya: 3 months plant with 10 days of drought Rep R-10b root, R-10b	ILLUMINA	4730483154 bp
SRR7145701	RNA-Seq of Carica papaya: 3 months plant with 10 days of drought Rep S-10a sap, S-10a	ILLUMINA	4908834859 bp
SRR7145702	RNA-Seq of Carica papaya: 3 months plant with 10 days of drought Rep S-10b sap, S-10b	ILLUMINA	6017174331 bp
SRR7145703	RNA-Seq of Carica papaya: 3 months plant with Well-watered (control) Rep L-CNa leaf, L-CNa	ILLUMINA	6382061911 bp
SRR7145704	RNA-Seq of Carica papaya: 3 months plant with Well-watered (control) Rep L-CNb leaf, L-CNb	ILLUMINA	6625040717 bp
SRR7145705	RNA-Seq of Carica papaya: 3 months plant with Well-watered (control) Rep R-CNa root, R-CNa	ILLUMINA	7149870736 bp
SRR7145706	RNA-Seq of Carica papaya: 3 months plant with Well-watered (control) Rep R-CNb root, R-CNb	ILLUMINA	5533144603 bp
SRR7145707	RNA-Seq of Carica papaya: 3 months plant with Well-watered (control) Rep S-CNa sap, S-CNa	ILLUMINA	4195672059 bp
SRR7145708	RNA-Seq of Carica papaya: 3 months plant with Well-watered (control) Rep S-CNb sap, S-CNb	ILLUMINA	5722165571 bp
SRR7145709	RNA-Seq of Carica papaya: 3 months plant with 20 days of drought Rep L-20a leaf, L-20a	ILLUMINA	5326187143 bp
SRR7145710	RNA-Seq of Carica papaya: 3 months plant with 20 days of drought Rep L-20b leaf, L-20b	ILLUMINA	4289368557 bp
SRR7145711	RNA-Seq of Carica papaya: 3 months plant with 20 days of drought Rep R-20a root, R-20a	ILLUMINA	4999274818 bp
SRR7145712	RNA-Seq of Carica papaya: 3 months plant with 20 days of drought Rep R-20b root, R-20b	ILLUMINA	3985245915 bp
SRR7145713	RNA-Seq of Carica papaya: 3 months plant with 20 days of drought Rep S-20a sap, S-20a	ILLUMINA	4632055719 bp
SRR7145714	RNA-Seq of Carica papaya: 3 months plant with 20 days of drought Rep S-20b sap, S-20b	ILLUMINA	4809594815 bp
SRR7145715	RNA-Seq of Carica papaya: 3 months plant with 10 days of drought Rep L-10a leaf, L-10a	ILLUMINA	3470279289 bp
SRR7145716	RNA-Seq of Carica papaya: 3 months plant with 10 days of drought Rep L-10b leaf, L-10b	ILLUMINA	6011806632 bp

PRJNA528193

Researchers report the application of NGS-derived transcriptome profile to elucidate a temporal line of both control and ethylene-induced ripening process of papaya fruit focusing on ripening-induced transcripts that act directly on plant cell wall disassembling

Soares et al., 2021

Library	Title	Platform	Total Base
SRR8755856	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	3688051966 bp
SRR8755857	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	2791322456 bp
SRR8755858	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	3782503126 bp
SRR8755859	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	2890133786 bp
SRR8755860	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	2970638664 bp
SRR8755861	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	3124228556 bp
SRR8755862	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	2877753206 bp
SRR8755863	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	3507717274 bp
SRR8755864	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	2967094170 bp
SRR8755865	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	2561150122 bp
SRR8755866	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	2427353604 bp
SRR8755867	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	2917931208 bp
SRR8755868	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	3353748632 bp
SRR8755869	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	3321792030 bp
SRR8755870	RNA-Seq of Carica papaya: 150 days after anthesis one-quarter of yellow peel pulp from Brazil: Linhares, 0 h/12 h control/24 h control/12 h ethylene/24 h ethylene, GSM3680525	ILLUMINA	3190680092 bp

PRJNA532376

Researchers compared the transcriptomic profiles of male and female floral buds at stage 0 to uncover genes and gene networks contributing to sex differentiation in papaya.

Liu et al., 2021

Library	Title	Platform	Total Base	VCF File
SRR8882139	RNA-Seq of Carica papaya: male plant with smaller than 1.0 mm stage 0 floral buds from Fujian Agriculture and Forest university greenhouse, Zhong Huang, M0	ILLUMINA	11970273762 bp
SRR8882140	RNA-Seq of Carica papaya: female plant with smaller than 1.0 mm stage 1 floral buds from Fujian Agriculture and Forest university greenhouse, Zhong Huang, F0	ILLUMINA	10542102654 bp

PRJNA534256

Relationship between growth and gene expression in papaya treated with freeze-thaw awakening method (papaya)

Library	Title	Platform	Total Base	VCF File
SRR8948496	RNA-Seq of Carica papaya: freeze thaw awakening - leaf, GSM3733617	ILLUMINA	22972834600 bp
SRR8948497	RNA-Seq of Carica papaya: freeze thaw awakening + leaf, GSM3733618	ILLUMINA	22365778200 bp

PRJNA549650

Auxin regulation involved in gynoecium morphogenesis of papaya flowers.

Zhou et al., 2019

Library	Title	Platform	Total Base
SRR9326708	RNA-Seq of Carica papaya: early stage with length <2 mm female flowers gynoecium from China: Fujian, F.FG-2	ILLUMINA	3342363710 bp
SRR9326709	RNA-Seq of Carica papaya: early stage with length <2 mm dominant hermaphrodite flowers gynoecium from China: Fujian, H_dom-FG-1	ILLUMINA	3814711824 bp
SRR9326710	RNA-Seq of Carica papaya: early stage with length <2 mm female flowers gynoecium from China: Fujian, F-FG-3	ILLUMINA	5073159300 bp
SRR9326711	RNA-Seq of Carica papaya: early stage with length <2 mm female flowers gynoecium from China: Fujian, F.FG-1	ILLUMINA	3250416744 bp
SRR9326712	RNA-Seq of Carica papaya: early stage with length <2 mm dominant hermaphrodite flowers gynoecium from China: Fujian, H_dom-FG-3	ILLUMINA	4183308496 bp
SRR9326713	RNA-Seq of Carica papaya: early stage with length <2 mm dominant hermaphrodite flowers gynoecium from China: Fujian, H_dom-FG-2	ILLUMINA	4119326612 bp
SRR9326714	RNA-Seq of Carica papaya: early stage with length <2 mm dominant hermaphrodite flowers gynoecium from China: Fujian, H_dom-RG-2	ILLUMINA	4503249630 bp
SRR9326715	RNA-Seq of Carica papaya: early stage with length <2 mm dominant hermaphrodite flowers gynoecium from China: Fujian, H_dom-RG-1	ILLUMINA	3570064170 bp
SRR9326716	RNA-Seq of Carica papaya: early stage with length <2 mm auxiliary hermaphrodite flowers gynoecium from China: Fujian, H_aux-RG-1	ILLUMINA	3873896814 bp
SRR9326717	RNA-Seq of Carica papaya: early stage with length <2 mm dominant hermaphrodite flowers gynoecium from China: Fujian, H_dom-RG-3	ILLUMINA	2526300678 bp
SRR9326718	RNA-Seq of Carica papaya: early stage with length <2 mm auxiliary hermaphrodite flowers gynoecium from China: Fujian, H_aux-RG-3	ILLUMINA	3365029120 bp
SRR9326719	RNA-Seq of Carica papaya: early stage with length <2 mm auxiliary hermaphrodite flowers gynoecium from China: Fujian, H_aux-RG-2	ILLUMINA	3834221994 bp
SRR9326720	RNA-Seq of Carica papaya: early stage with length <2 mm female flowers gynoecium from China: Fujian, F-FG-2	ILLUMINA	3919178952 bp
SRR9326721	RNA-Seq of Carica papaya: early stage with length <2 mm female flowers gynoecium from China: Fujian, F-FG-1	ILLUMINA	3077707552 bp
SRR9326722	RNA-Seq of Carica papaya: early stage with length <2 mm male flowers gynoecium from China: Fujian, M.RG-1	ILLUMINA	2757627644 bp
SRR9326723	RNA-Seq of Carica papaya: early stage with length <2 mm male flowers gynoecium from China: Fujian, M.RG-3	ILLUMINA	3814451850 bp
SRR9326724	RNA-Seq of Carica papaya: early stage with length <2 mm female flowers gynoecium from China: Fujian, F.FG-3	ILLUMINA	3698368510 bp
SRR9326725	RNA-Seq of Carica papaya: early stage with length <2 mm male flowers gynoecium from China: Fujian, M.RG-2	ILLUMINA	3261285152 bp

PRJNA555541

RNAseq of papaya leaves and flowers from male and female plants. Researchers investigated whether dosage compensation operated is evolved in Carica papaya

Liu et al., 2021

Library	Title	Platform	Total Base
SRR9715657	RNA-Seq of Carica papaya: 7-12mm male immature flower replicate 2 from USA: Hawaii, AU9, M_Flower_R5	ILLUMINA	3990604536 bp
SRR9715658	RNA-Seq of Carica papaya: 7-12mm male immature flower replicate 1 from USA: Hawaii, AU9, M_Flower_R4	ILLUMINA	2167334600 bp
SRR9715659	RNA-Seq of Carica papaya: 1-6mm male young floral buds replicate 1 from USA: Hawaii, AU9, M_Flower_R1	ILLUMINA	2250597200 bp
SRR9715660	RNA-Seq of Carica papaya: 7-12mm female immature flower replicate 2 from USA: Hawaii, AU9, F_Flower_R5	ILLUMINA	4350577626 bp
SRR9715661	RNA-Seq of Carica papaya: 15-20mm male mature flower from USA: Hawaii, AU9, M_Flower_R3	ILLUMINA	3482416370 bp
SRR9715662	RNA-Seq of Carica papaya: 1-6mm male young floral buds replicate 2 from USA: Hawaii, AU9, M_Flower_R2	ILLUMINA	4954688522 bp
SRR9715663	RNA-Seq of Carica papaya: 1-6mm female young floral buds replicate 2 from USA: Hawaii, AU9, F_Flower_R2	ILLUMINA	4537464996 bp
SRR9715664	RNA-Seq of Carica papaya: 1-6mm female young floral buds replicate 1 from USA: Hawaii, AU9, F_Flower_R1	ILLUMINA	2557634400 bp
SRR9715665	RNA-Seq of Carica papaya: male mature leaf replicate 3 from USA: Hawaii, AU9, M_leaf_R3	ILLUMINA	3846397681 bp
SRR9715666	RNA-Seq of Carica papaya: male mature leaf replicate 2 from USA: Hawaii, AU9, M_leaf_R2	ILLUMINA	9591605794 bp
SRR9715667	RNA-Seq of Carica papaya: male mature leaf replicate 1 from USA: Hawaii, AU9, M_leaf_R1	ILLUMINA	2585756900 bp
SRR9715668	RNA-Seq of Carica papaya: female mature leaf replicate 3 from USA: Hawaii, AU9, F_leaf_R3	ILLUMINA	6580171614 bp
SRR9715669	RNA-Seq of Carica papaya: female mature leaf replicate 2 from USA: Hawaii, AU9, F_leaf_R2	ILLUMINA	5902036404 bp
SRR9715670	RNA-Seq of Carica papaya: female mature leaf replicate 1 from USA: Hawaii, AU9, F_leaf_R1	ILLUMINA	3154079300 bp
SRR9715671	RNA-Seq of Carica papaya: 7-12mm female immature flower replicate 1 from USA: Hawaii, AU9, F_Flower_R4	ILLUMINA	2262608400 bp
SRR9715672	RNA-Seq of Carica papaya: 15-20mm female mature flower from USA: Hawaii, AU9, F_Flower_R3	ILLUMINA	2792650808 bp

PRJNA565901

The aim of this study was to identify differentially expressed genes among male, female and hermaphrodite flowers in papaya during early (pre-meiosis) and later (post-meiosis) stages of flower development.

Zerpa-Catanho et al., 2019

Library	Title	Platform	Total Base
SRR10129517	RNA-Seq of Carica papaya: pre-meiosis stage 1-6 mm female flower bud, AU9, GSM4081661	ILLUMINA	2268732498 bp
SRR10129518	RNA-Seq of Carica papaya: pre-meiosis stage 1-6 mm female flower bud, AU9, GSM4081662	ILLUMINA	2557634400 bp
SRR10129519	RNA-Seq of Carica papaya: post-meiosis stage 7-12 mm female flower bud, AU9, GSM4081663	ILLUMINA	2175288813 bp
SRR10129520	RNA-Seq of Carica papaya: post-meiosis stage 7-12 mm female flower bud, AU9, GSM4081664	ILLUMINA	2262608400 bp
SRR10129521	RNA-Seq of Carica papaya: pre-meiosis stage 1-6 mm male flower bud, AU9, GSM4081665	ILLUMINA	2477344261 bp
SRR10129522	RNA-Seq of Carica papaya: pre-meiosis stage 1-6 mm male flower bud, AU9, GSM4081666	ILLUMINA	2250597200 bp
SRR10129523	RNA-Seq of Carica papaya: post-meiosis stage 7-12 mm male flower bud, AU9, GSM4081667	ILLUMINA	1995302268 bp
SRR10129524	RNA-Seq of Carica papaya: post-meiosis stage 7-12 mm male flower bud, AU9, GSM4081668	ILLUMINA	2167334600 bp
SRR10129525	RNA-Seq of Carica papaya: pre-meiosis stage 1-6 mm hermaphrodite flower bud, SunUp, GSM4081669	ILLUMINA	2145177986 bp
SRR10129526	RNA-Seq of Carica papaya: pre-meiosis stage 1-6 mm hermaphrodite flower bud, SunUp, GSM4081670	ILLUMINA	1932355400 bp
SRR10129527	RNA-Seq of Carica papaya: post-meiosis stage 7-12 mm hermaphrodite flower bud, SunUp, GSM4081671	ILLUMINA	2345553906 bp
SRR10129528	RNA-Seq of Carica papaya: post-meiosis stage 7-12 mm hermaphrodite flower bud, SunUp, GSM4081672	ILLUMINA	2320095800 bp

PRJNA606144

Next generation transcriptome sequencing of male and female floral buds of RCTP-1 variety of papaya (Carica papya L.)

Library	Title	Platform	Total Base	VCF File
SRR11560947	RNA-Seq of Carica papaya: 10 months and 10 days Female floral bud from India, Female floral buds	ILLUMINA	4655895657 bp
SRR11560948	RNA-Seq of Carica papaya: 10 months and 10 days Male floral bud from India, Male floral buds	ILLUMINA	3742593200 bp

PRJNA687615

Gene regulation network analyses reveal molecular mechanism of pistil development in papaya. Through transcriptome analysis of different development stages of papaya carpel, researchers constructed a gene regulation network to reveal the molecular mechanism of the development of papaya carpel.

Liao et al., 2022

Library	Title	Platform	Total Base
SRR13300066	RNA-Seq of Carica papaya: pre-meiotic stages S2 male pistil from China: Fujian, biological replicate 1, M2P1	ILLUMINA	2757627644 bp
SRR13300067	RNA-Seq of Carica papaya: mitotic stage S4 female pistil from China: Fujian, biological replicate 3, F4P3	ILLUMINA	2461750770 bp
SRR13300068	RNA-Seq of Carica papaya: mitotic stage S4 female pistil from China: Fujian, biological replicate 2, F4P2	ILLUMINA	3406202780 bp
SRR13300069	RNA-Seq of Carica papaya: mitotic stage S4 female pistil from China: Fujian, biological replicate 1, F4P1	ILLUMINA	3806914422 bp
SRR13300070	RNA-Seq of Carica papaya: post-meiotic stage S3 female pistil from China: Fujian, biological replicate 3, F3P3	ILLUMINA	4487815416 bp
SRR13300071	RNA-Seq of Carica papaya: post-meiotic stage S3 female pistil from China: Fujian, biological replicate 2, F3P2	ILLUMINA	3597767460 bp
SRR13300072	RNA-Seq of Carica papaya: post-meiotic stage S3 female pistil from China: Fujian, biological replicate 1, F3P1	ILLUMINA	3658340392 bp
SRR13300073	RNA-Seq of Carica papaya: pre-meiotic stages S2 female pistil from China: Fujian, biological replicate 3, F2P3	ILLUMINA	3698368510 bp
SRR13300074	RNA-Seq of Carica papaya: mitotic stage S4 male pistil from China: Fujian, biological replicate 3, M4P3	ILLUMINA	3766244752 bp
SRR13300075	RNA-Seq of Carica papaya: mitotic stage S4 male pistil from China: Fujian, biological replicate 2, M4P2	ILLUMINA	3418005640 bp
SRR13300076	RNA-Seq of Carica papaya: mitotic stage S4 male pistil from China: Fujian, biological replicate 1, M4P1	ILLUMINA	3086536568 bp
SRR13300077	RNA-Seq of Carica papaya: post-meiotic stage S3 male pistil from China: Fujian, biological replicate 3, M3P3	ILLUMINA	5721815236 bp
SRR13300078	RNA-Seq of Carica papaya: post-meiotic stage S3 male pistil from China: Fujian, biological replicate 2, M3P2	ILLUMINA	3018202594 bp
SRR13300079	RNA-Seq of Carica papaya: post-meiotic stage S3 male pistil from China: Fujian, biological replicate 1, M3P1	ILLUMINA	4210318724 bp
SRR13300080	RNA-Seq of Carica papaya: pre-meiotic stages S2 male pistil from China: Fujian, biological replicate 3, M2P3	ILLUMINA	3814451850 bp
SRR13300081	RNA-Seq of Carica papaya: pre-meiotic stages S2 male pistil from China: Fujian, biological replicate 2, M2P2	ILLUMINA	3261285152 bp
SRR13300082	RNA-Seq of Carica papaya: pre-meiotic stages S2 female pistil from China: Fujian, biological replicate 2, F2P2	ILLUMINA	3342363710 bp
SRR13300083	RNA-Seq of Carica papaya: pre-meiotic stages S2 female pistil from China: Fujian, biological replicate 1, F2P1	ILLUMINA	3250416744 bp

PRJNA693693

RNA-seq from different papaya tissues. It is mainly used for papaya genome gene annotation.

Liao et al., 2021

Library	Title	Platform	Total Base
SRR13495659	RNA-Seq of Carica papaya: ovule from China: Fujian, Common, ovule-1	ILLUMINA	3808442552 bp
SRR13495661	RNA-Seq of Carica papaya: pollen from China: Fujian, Common, pollen-2	ILLUMINA	3751464008 bp
SRR13495664	RNA-Seq of Carica papaya: Stamen from China: Fujian, Common, Stamen-2	ILLUMINA	3368007812 bp
SRR13495657	RNA-Seq of Carica papaya: ovule from China: Fujian, Common, ovule-3	ILLUMINA	3559670866 bp
SRR13495658	RNA-Seq of Carica papaya: ovule from China: Fujian, Common, ovule-2	ILLUMINA	3618197942 bp
SRR13495660	RNA-Seq of Carica papaya: pollen from China: Fujian, Common, pollen-3	ILLUMINA	3868931654 bp
SRR13495662	RNA-Seq of Carica papaya: pollen from China: Fujian, Common, pollen-1	ILLUMINA	3741724982 bp
SRR13495663	RNA-Seq of Carica papaya: Stamen from China: Fujian, Common, Stamen-3	ILLUMINA	3273873590 bp
SRR13495665	RNA-Seq of Carica papaya: Stamen from China: Fujian, Common, Stamen-1	ILLUMINA	4806507988 bp

PRJNA713527

In order to describe the network of gene expression that underlies callus and shoot regeneration in papaya, a comprehensive analysis of gene expression of samples at five different timepoints: hypocotyl, callus 1, callus 2, callus 3, and shoot.

Library	Title	Platform	Total Base
SRR14234434	RNA-Seq of Carica papaya: Hypocotyl from China: Fuzhou, HY-1	ILLUMINA	7319076900 bp
SRR14234435	RNA-Seq of Carica papaya: callus from China: Fuzhou, C3-3	ILLUMINA	7256342700 bp
SRR14234436	RNA-Seq of Carica papaya: callus from China: Fuzhou, C3-2	ILLUMINA	7473664500 bp
SRR14234437	RNA-Seq of Carica papaya: callus from China: Fuzhou, C3-1	ILLUMINA	7769454600 bp
SRR14234438	RNA-Seq of Carica papaya: callus from China: Fuzhou, C2-3	ILLUMINA	8552289300 bp
SRR14234439	RNA-Seq of Carica papaya: callus from China: Fuzhou, C2-2	ILLUMINA	6735955200 bp
SRR14234440	RNA-Seq of Carica papaya: callus from China: Fuzhou, C2-1	ILLUMINA	7561962600 bp
SRR14234441	RNA-Seq of Carica papaya: callus from China: Fuzhou, C1-3	ILLUMINA	7502356800 bp
SRR14234442	RNA-Seq of Carica papaya: shoot from China: Fuzhou, SH-3	ILLUMINA	6935107800 bp
SRR14234443	RNA-Seq of Carica papaya: shoot from China: Fuzhou, SH-2	ILLUMINA	4598143500 bp
SRR14234444	RNA-Seq of Carica papaya: shoot from China: Fuzhou, SH-1	ILLUMINA	6934593900 bp
SRR14234445	RNA-Seq of Carica papaya: Hypocotyl from China: Fuzhou, HY-3	ILLUMINA	6259984200 bp
SRR14234446	RNA-Seq of Carica papaya: Hypocotyl from China: Fuzhou, HY-2	ILLUMINA	6913146000 bp
SRR14234447	RNA-Seq of Carica papaya: callus from China: Fuzhou, C1-2	ILLUMINA	8496659100 bp
SRR14234448	RNA-Seq of Carica papaya: callus from China: Fuzhou, C1-1	ILLUMINA	5337071700 bp

PRJNA727683

Structural and functional impact of particle bombardment on the transgenic Carica papaya genome. Researchers uploaded two Carica papaya genomes of SunUp and Sunset and the related data.

Library	Title	Platform	Total Base
SRR14483180	RNA-Seq of Carica papaya: mature plant with leaf from China: Fujian, Sunset, biological replicate sample4 1, SunsetXY-ML1	ILLUMINA	6579180000 bp
SRR14483181	RNA-Seq of Carica papaya: mature plant with Flower from China: Fujian, SunUp, biological replicate sample3 3, SPH-Index12	ILLUMINA	4665236100 bp
SRR14483182	RNA-Seq of Carica papaya: mature plant with Flower from China: Fujian, SunUp, biological replicate sample3 2, SPH-Index11	ILLUMINA	5310634500 bp
SRR14483183	RNA-Seq of Carica papaya: mature plant with Flower from China: Fujian, SunUp, biological replicate sample3 1, SPH-Index10	ILLUMINA	4948046100 bp
SRR14483184	RNA-Seq of Carica papaya: mature plant with leaf from China: Fujian, SunUp, biological replicate sample2 3, SP-XYh-YL3	ILLUMINA	8862248700 bp
SRR14483185	RNA-Seq of Carica papaya: mature plant with leaf from China: Fujian, SunUp, biological replicate sample2 2, SP-XYh-YL2	ILLUMINA	7259520300 bp
SRR14483186	RNA-Seq of Carica papaya: mature plant with leaf from China: Fujian, SunUp, biological replicate sample2 1, SP-XYh-YL1	ILLUMINA	9919330500 bp
SRR14483190	RNA-Seq of Carica papaya: mature plant with leaf from China: Fujian, SunUp, biological replicate sample1 3, SP-XYh-ML3	ILLUMINA	6119441400 bp
SRR14483193	RNA-Seq of Carica papaya: mature plant with Flower from China: Fujian, Sunset, biological replicate sample6 3, SunsetXY-YF3	ILLUMINA	6464964000 bp
SRR14483194	RNA-Seq of Carica papaya: mature plant with Flower from China: Fujian, Sunset, biological replicate sample6 2, SunsetXY-YF2	ILLUMINA	8701414200 bp
SRR14483195	RNA-Seq of Carica papaya: mature plant with Flower from China: Fujian, Sunset, biological replicate sample6 1, SunsetXY-YF1	ILLUMINA	5863854300 bp
SRR14483196	RNA-Seq of Carica papaya: mature plant with leaf from China: Fujian, Sunset, biological replicate sample5 3, SunsetXY-YL3	ILLUMINA	8410602000 bp
SRR14483197	RNA-Seq of Carica papaya: mature plant with leaf from China: Fujian, Sunset, biological replicate sample5 2, SunsetXY-YL2	ILLUMINA	8505395400 bp
SRR14483198	RNA-Seq of Carica papaya: mature plant with leaf from China: Fujian, Sunset, biological replicate sample5 1, SunsetXY-YL1	ILLUMINA	6689109000 bp
SRR14483199	RNA-Seq of Carica papaya: mature plant with leaf from China: Fujian, Sunset, biological replicate sample4 3, SunsetXY-ML3	ILLUMINA	5913289200 bp
SRR14483200	RNA-Seq of Carica papaya: mature plant with leaf from China: Fujian, Sunset, biological replicate sample4 2, SunsetXY-ML2	ILLUMINA	6268818000 bp
SRR14483201	RNA-Seq of Carica papaya: mature plant with leaf from China: Fujian, SunUp, biological replicate sample1 2, SP-XYh-ML2	ILLUMINA	6997794900 bp
SRR15652203	RNA-Seq of Carica papaya: 100% yellow plant with fruit from China:Fuzhou, SunUp, SunUpH_fruit_S6_R1.fastq	ILLUMINA	2508712500 bp
SRR15652204	RNA-Seq of Carica papaya: 75% yellow plant with fruit from China:Fuzhou, SunUp, SunUpH_fruit_S5_R1.fastq	ILLUMINA	3178116900 bp
SRR15652205	RNA-Seq of Carica papaya: 50% yellow plant with fruit from China:Fuzhou, SunUp, SunUpH_fruit_S4_R1.fastq	ILLUMINA	812132100 bp
SRR15652206	RNA-Seq of Carica papaya: 25% yellow plant with fruit from China: Fuzhou, SunUp, SunUpH_fruit_S3_R1.fastq	ILLUMINA	853095400 bp
SRR15652207	RNA-Seq of Carica papaya: color break plant with fruit from China: Fuzhou, SunUp, SunUpH_fruit_S2_colorbreak_R1.fastq	ILLUMINA	2484925600 bp
SRR15652208	RNA-Seq of Carica papaya: immature green plant with fruit from China: Fuzhou, SunUp, SunUpH_fruit_S1_immature_R1.fastq	ILLUMINA	1891649100 bp

PRJNA858993

Characterization and analysis of the promoter region of Monodehydroascorbate reductase 4 (CpMDAR4) in papaya.

Zerpa-Catanho et al., 2022

Library	Title	Platform	Total Base
SRR20218272	RNA-seq of Carica papaya: pollen of mature male flower bud, size 15-20 mm, GSM6340023	ILLUMINA	3868931654 bp
SRR20218273	RNA-seq of Carica papaya: pollen of mature male flower bud, size 15-20 mm, GSM6340022	ILLUMINA	3751464008 bp
SRR20218274	RNA-seq of Carica papaya: pollen of mature male flower bud, size 15-20 mm, GSM6340021	ILLUMINA	3741724982 bp
SRR20218275	RNA-seq of Carica papaya: stamens of mature male flower bud, size 15-20 mm, GSM6340020	ILLUMINA	3718643452 bp
SRR20218276	RNA-seq of Carica papaya: stamens of mature male flower bud, size 15-20 mm, GSM6340019	ILLUMINA	4133843746 bp
SRR20218277	RNA-seq of Carica papaya: stamens of mature male flower bud, size 15-20 mm, GSM6340018	ILLUMINA	3257399682 bp
SRR20218278	RNA-seq of Carica papaya: stamens of post-meiotic male flower bud, size 7-12 mm, GSM6340017	ILLUMINA	3690624436 bp
SRR20218279	RNA-seq of Carica papaya: stamens of post-meiotic male flower bud, size 7-12 mm, GSM6340016	ILLUMINA	2789250946 bp
SRR20218280	RNA-seq of Carica papaya: stamens of post-meiotic male flower bud, size 7-12 mm, GSM6340015	ILLUMINA	4245393196 bp
SRR20218281	RNA-seq of Carica papaya: stamens of pre-meiotic male flower bud, size 4.5-6.5 mm, GSM6340014	ILLUMINA	4042608830 bp
SRR20218282	RNA-seq of Carica papaya: stamens of pre-meiotic male flower bud, size 4.5-6.5 mm, GSM6340013	ILLUMINA	3640992026 bp
SRR20218283	RNA-seq of Carica papaya: stamens of pre-meiotic male flower bud, size 4.5-6.5 mm, GSM6340012	ILLUMINA	3804302562 bp
SRR20218284	RNA-seq of Carica papaya: stamens of pre-meiotic male flower bud, size 2-4.5 mm, GSM6340011	ILLUMINA	3674858538 bp
SRR20218285	RNA-seq of Carica papaya: stamens of pre-meiotic male flower bud, size 2-4.5 mm, GSM6340010	ILLUMINA	5059267962 bp
SRR20218286	RNA-seq of Carica papaya: stamens of pre-meiotic male flower bud, size 2-4.5 mm, GSM6340009	ILLUMINA	3193127928 bp
SRR20218287	RNA-seq of Carica papaya: stamens of pre-meiotic male flower bud, size 1-1.5 mm, GSM6340008	ILLUMINA	3273873590 bp
SRR20218288	RNA-seq of Carica papaya: stamens of pre-meiotic male flower bud, size 1-1.5 mm, GSM6340007	ILLUMINA	3368007812 bp
SRR20218289	RNA-seq of Carica papaya: stamens of pre-meiotic male flower bud, size 1-1.5 mm, GSM6340006	ILLUMINA	4806507988 bp
SRR20218290	RNA-seq of Carica papaya: pistillode of mature male flower bud, size 15-20 mm, GSM6340005	ILLUMINA	3927145428 bp
SRR20218291	RNA-seq of Carica papaya: pistillode of mature male flower bud, size 15-20 mm, GSM6340004	ILLUMINA	3430216540 bp
SRR20218292	RNA-seq of Carica papaya: pistillode of mature male flower bud, size 15-20 mm, GSM6340003	ILLUMINA	3596177114 bp
SRR20218293	RNA-seq of Carica papaya: pistillode of post-meiotic male flower bud, size 7-12 mm, GSM6340002	ILLUMINA	3766244752 bp
SRR20218294	RNA-seq of Carica papaya: pistillode of post-meiotic male flower bud, size 7-12 mm, GSM6340001	ILLUMINA	3418005640 bp
SRR20218295	RNA-seq of Carica papaya: pistillode of post-meiotic male flower bud, size 7-12 mm, GSM6340000	ILLUMINA	3086536568 bp
SRR20218296	RNA-seq of Carica papaya: pistillode of pre-meiotic male flower bud, size 4.5-6.5 mm, GSM6339999	ILLUMINA	4108016834 bp
SRR20218297	RNA-seq of Carica papaya: pistillode of pre-meiotic male flower bud, size 4.5-6.5 mm, GSM6339998	ILLUMINA	3248548648 bp
SRR20218298	RNA-seq of Carica papaya: pistillode of pre-meiotic male flower bud, size 2-4.5 mm, GSM6339997	ILLUMINA	3018202594 bp
SRR20218299	RNA-seq of Carica papaya: pistillode of pre-meiotic male flower bud, size 2-4.5 mm, GSM6339996	ILLUMINA	4210318724 bp
SRR20218300	RNA-seq of Carica papaya: pistillode of pre-meiotic male flower bud, size 1-1.5 mm, GSM6339995	ILLUMINA	3814451850 bp
SRR20218301	RNA-seq of Carica papaya: pistillode of pre-meiotic male flower bud, size 1-1.5 mm, GSM6339994	ILLUMINA	3261285152 bp
SRR20218302	RNA-seq of Carica papaya: pistillode of pre-meiotic male flower bud, size 1-1.5 mm, GSM6339993	ILLUMINA	2757627644 bp
SRR20218303	RNA-seq of Carica papaya: male flower bud, size < 1 mm, GSM6339992	ILLUMINA	4140368346 bp
SRR20218304	RNA-seq of Carica papaya: male flower bud, size < 1 mm, GSM6339991	ILLUMINA	3985512318 bp
SRR20218305	RNA-seq of Carica papaya: male flower bud, size < 1 mm, GSM6339990	ILLUMINA	3844393098 bp
SRR20218306	RNA-seq of Carica papaya: ovules of mature female flower bud, size 15-20 mm, GSM6339989	ILLUMINA	3559670866 bp
SRR20218307	RNA-seq of Carica papaya: ovules of mature female flower bud, size 15-20 mm, GSM6339988	ILLUMINA	3618197942 bp
SRR20218308	RNA-seq of Carica papaya: ovules of mature female flower bud, size 15-20 mm, GSM6339987	ILLUMINA	3808442552 bp
SRR20218309	RNA-seq of Carica papaya: pistil of mature female flower bud, size 15-20 mm, GSM6339986	ILLUMINA	3579207094 bp
SRR20218310	RNA-seq of Carica papaya: pistil of mature female flower bud, size 15-20 mm, GSM6339985	ILLUMINA	5175922760 bp
SRR20218311	RNA-seq of Carica papaya: pistil of mature female flower bud, size 15-20 mm, GSM6339984	ILLUMINA	2817216432 bp
SRR20218312	RNA-seq of Carica papaya: pistil of post-meiotic female flower bud, size 7-12 mm, GSM6339983	ILLUMINA	2461750770 bp
SRR20218313	RNA-seq of Carica papaya: pistil of post-meiotic female flower bud, size 7-12 mm, GSM6339982	ILLUMINA	3406202780 bp
SRR20218314	RNA-seq of Carica papaya: pistil of post-meiotic female flower bud, size 7-12 mm, GSM6339981	ILLUMINA	3806914422 bp
SRR20218315	RNA-seq of Carica papaya: pistil of pre-meiotic female flower bud, size 4.5-6.5 mm, GSM6339980	ILLUMINA	4102329524 bp
SRR20218316	RNA-seq of Carica papaya: pistil of pre-meiotic female flower bud, size 4.5-6.5 mm, GSM6339979	ILLUMINA	4455808314 bp
SRR20218317	RNA-seq of Carica papaya: pistil of pre-meiotic female flower bud, size 4.5-6.5 mm, GSM6339978	ILLUMINA	3487705740 bp
SRR20218318	RNA-seq of Carica papaya: pistil of pre-meiotic female flower bud, size 2-4.5 mm, GSM6339977	ILLUMINA	4487815416 bp
SRR20218319	RNA-seq of Carica papaya: pistil of pre-meiotic female flower bud, size 2-4.5 mm, GSM6339976	ILLUMINA	3597767460 bp
SRR20218320	RNA-seq of Carica papaya: pistil of pre-meiotic female flower bud, size 2-4.5 mm, GSM6339975	ILLUMINA	3658340392 bp
SRR20218321	RNA-seq of Carica papaya: pistil of pre-meiotic female flower bud, size 1-1.5 mm, GSM6339974	ILLUMINA	3698368510 bp
SRR20218322	RNA-seq of Carica papaya: pistil of pre-meiotic female flower bud, size 1-1.5 mm, GSM6339973	ILLUMINA	3342363710 bp
SRR20218323	RNA-seq of Carica papaya: pistil of pre-meiotic female flower bud, size 1-1.5 mm, GSM6339972	ILLUMINA	3250416744 bp
SRR20218324	RNA-seq of Carica papaya: female flower bud, size < 1 mm, GSM6339971	ILLUMINA	3277149020 bp
SRR20218325	RNA-seq of Carica papaya: female flower bud, size < 1 mm, GSM6339970	ILLUMINA	3256594308 bp
SRR20218326	RNA-seq of Carica papaya: female flower bud, size < 1 mm, GSM6339969	ILLUMINA	4008359326 bp

PRJNA880626

Identification and validation of key genes related to preferred flavour profiles in Australian commercial papaya (Carica papaya L.).

Library	Title	Platform	Total Base
SRR21590098	RNA-seq of Carica papaya: unripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586158	ILLUMINA	5706461200 bp
SRR21590099	RNA-seq of Carica papaya: unripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586158	ILLUMINA	5706476600 bp
SRR21590100	RNA-seq of Carica papaya: unripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586157	ILLUMINA	5968741000 bp
SRR21590101	RNA-seq of Carica papaya: unripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586157	ILLUMINA	5953713400 bp
SRR21590102	RNA-seq of Carica papaya: unripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586156	ILLUMINA	6055116800 bp
SRR21590103	RNA-seq of Carica papaya: unripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586156	ILLUMINA	6046693600 bp
SRR21590104	RNA-seq of Carica papaya: ripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586155	ILLUMINA	5875362200 bp
SRR21590105	RNA-seq of Carica papaya: ripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586155	ILLUMINA	5871148600 bp
SRR21590106	RNA-seq of Carica papaya: ripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586154	ILLUMINA	6328345400 bp
SRR21590107	RNA-seq of Carica papaya: ripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586154	ILLUMINA	6322888200 bp
SRR21590108	RNA-seq of Carica papaya: ripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586153	ILLUMINA	6254845000 bp
SRR21590109	RNA-seq of Carica papaya: ripe stage fruit, bitter flavour and musty aroma, 1B, GSM6586153	ILLUMINA	6254508200 bp
SRR21590110	RNA-seq of Carica papaya: unripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586152	ILLUMINA	6142870800 bp
SRR21590111	RNA-seq of Carica papaya: unripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586152	ILLUMINA	6134372400 bp
SRR21590112	RNA-seq of Carica papaya: unripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586151	ILLUMINA	6338273200 bp
SRR21590113	RNA-seq of Carica papaya: unripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586151	ILLUMINA	6323119400 bp
SRR21590114	RNA-seq of Carica papaya: unripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586150	ILLUMINA	6243457000 bp
SRR21590115	RNA-seq of Carica papaya: unripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586150	ILLUMINA	6237672600 bp
SRR21590116	RNA-seq of Carica papaya: ripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586149	ILLUMINA	5897652000 bp
SRR21590117	RNA-seq of Carica papaya: ripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586149	ILLUMINA	5889622000 bp
SRR21590118	RNA-seq of Carica papaya: ripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586148	ILLUMINA	6444507000 bp
SRR21590119	RNA-seq of Carica papaya: ripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586148	ILLUMINA	6435686600 bp
SRR21590120	RNA-seq of Carica papaya: ripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586147	ILLUMINA	6877114400 bp
SRR21590121	RNA-seq of Carica papaya: ripe stage fruit, sweet flavour and floral aroma, RB1, GSM6586147	ILLUMINA	6849951200 bp

Species Info.

Omics Data

Omics Analysis

Seq. Analysis

Omics Analysis

Others

Project