Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA498605 The comprehensive variations among three Taxaceae trees, including one taxol-producing (TP) and two non-taxol producing (NTP) trees, were compared -
3
Library Title Platform Total Base VCF File
SRR8113476 RNA-Seq of Torreya grandis: three years non-taxol producing (NTP) tree with fresh twigs (wood+needles), GSM3447570 ILLUMINA 7136219786 bp
SRR8113477 RNA-Seq of Torreya grandis: three years non-taxol producing (NTP) tree with fresh twigs (wood+needles), GSM3447573 ILLUMINA 6477398513 bp
SRR8113478 RNA-Seq of Torreya grandis: three years non-taxol producing (NTP) tree with fresh twigs (wood+needles), GSM3447575 ILLUMINA 6130224503 bp
PRJNA672806 Transcriptome data from three typical stages of Torreya grandis seed development Zhang et al., 2022
9
Library Title Platform Total Base VCF File
SRR12964406 RNA-Seq of Torreya grandis: the late stage of material transformation seed from China, Merrillii, Stage2-1 ILLUMINA 8208003600 bp
SRR12964411 RNA-Seq of Torreya grandis: the mature stage seed from China, Merrillii, Stage3-2 ILLUMINA 8771940300 bp
SRR12964412 RNA-Seq of Torreya grandis: the mature stage seed from China, Merrillii, Stage3-1 ILLUMINA 9188593800 bp
SRR12964413 RNA-Seq of Torreya grandis: the late stage of material transformation seed from China, Merrillii, Stage2-3 ILLUMINA 8866301400 bp
SRR12964407 RNA-Seq of Torreya grandis: early stage of material transformation seed from China, Merrillii, Stage1-3 ILLUMINA 8575797000 bp
SRR12964408 RNA-Seq of Torreya grandis: early stage of material transformation seed from China, Merrillii, Stage1-2 ILLUMINA 8760990600 bp
SRR12964409 RNA-Seq of Torreya grandis: early stage of material transformation seed from China, Merrillii, Stage1-1 ILLUMINA 8752442700 bp
SRR12964410 RNA-Seq of Torreya grandis: the mature stage seed from China, Merrillii, Stage3-3 ILLUMINA 8788404000 bp
SRR12964414 RNA-Seq of Torreya grandis: the late stage of material transformation seed from China, Merrillii, Stage2-2 ILLUMINA 9065566500 bp
PRJNA687396 Transcriptomics combined with physiological approaches was used to explore the mechanism of the yellow leaf mutant Torreya grandis ‘Merrillii’. Shen et al., 2022
6
Library Title Platform Total Base VCF File
SRR13307831 RNA-Seq of Torreya grandis: 2 years mutant plant with yellow leaves from China: Zhejiang, Y2 ILLUMINA 11240269200 bp
SRR13307832 RNA-Seq of Torreya grandis: 2 years mutant plant with yellow leaves from China: Zhejiang, Y1 ILLUMINA 11609429700 bp
SRR13307833 RNA-Seq of Torreya grandis: 2 years wild plant with green leaves from China: Zhejiang, G3 ILLUMINA 11274171300 bp
SRR13307834 RNA-Seq of Torreya grandis: 2 years wild plant with green leaves from China: Zhejiang, G2 ILLUMINA 11412141900 bp
SRR13307835 RNA-Seq of Torreya grandis: 2 years wild plant with green leaves from China: Zhejiang, G1 ILLUMINA 11437615200 bp
SRR13307836 RNA-Seq of Torreya grandis: 2 years mutant plant with yellow leaves from China: Zhejiang, Y3 ILLUMINA 11425175100 bp
PRJNA765927 Torreya grandis Raw sequence reads -
6
Library Title Platform Total Base VCF File
SRR16069247 RNA-Seq of Torreya grandis: 141 days after seeds protrusion plant with aril, Merrillii, 141DASP-3 ILLUMINA 11275771886 bp
SRR16069248 RNA-Seq of Torreya grandis: 141 days after seeds protrusion plant with aril, Merrillii, 141DASP-2 ILLUMINA 12177819310 bp
SRR16069249 RNA-Seq of Torreya grandis: 141 days after seeds protrusion plant with aril, Merrillii, 141DASP-1 ILLUMINA 11484463248 bp
SRR16069250 RNA-Seq of Torreya grandis: 96 days after seeds protrusion plant with aril, Merrillii, 96DASP-3 ILLUMINA 13670120902 bp
SRR16069251 RNA-Seq of Torreya grandis: 96 days after seeds protrusion plant with aril, Merrillii, 96DASP-2 ILLUMINA 12557611792 bp
SRR16069252 RNA-Seq of Torreya grandis: 96 days after seeds protrusion plant with aril, Merrillii, 96DASP-1 ILLUMINA 13500582632 bp
PRJNA815869 The effects of strigolactone on genetic responses of Torreya grandis, under simulated nitrogen deposition were explored using high-throughput sequencing techniques Yu et al., 2022
20
Library Title Platform Total Base VCF File
SRR18320943 RNA-Seq of Torreya grandis: control replicate3 treatment treatment 1 year plant with leaves from China: linan, Merrillii, CK3 ILLUMINA 6963049800 bp
SRR18320944 RNA-Seq of Torreya grandis: nitrogen+GR24 treated for 72h replicate3 treatment 1 year plant with leaves from China: linan, Merrillii, N+GR72_3 ILLUMINA 6043980600 bp
SRR18320945 RNA-Seq of Torreya grandis: nitrogen treated for 24h replicate1 treatment 1 year plant with leaves from China: linan, Merrillii, N24_1 ILLUMINA 6818433000 bp
SRR18320946 RNA-Seq of Torreya grandis: nitrogen treated for 24h replicate2 treatment 1 year plant with leaves from China: linan, Merrillii, N24_2 ILLUMINA 6773355300 bp
SRR18320947 RNA-Seq of Torreya grandis: nitrogen treated for 24h replicate3 treatment 1 year plant with leaves from China: linan, Merrillii, N24_3 ILLUMINA 6927167100 bp
SRR18320948 RNA-Seq of Torreya grandis: GR24treated for 24h replicate1 treatment 1 year plant with leaves from China: linan, Merrillii, GR24_1 ILLUMINA 6314249100 bp
SRR18320949 RNA-Seq of Torreya grandis: GR24treated for 24h replicate2 treatment 1 year plant with leaves from China: linan, Merrillii, GR24_2 ILLUMINA 6439705500 bp
SRR18320950 RNA-Seq of Torreya grandis: nitrogen+GR24 treated for 24h replicate1 treatment 1 year plant with leaves from China: linan, Merrillii, N+GR24_1 ILLUMINA 6164249100 bp
SRR18320951 RNA-Seq of Torreya grandis: GR24treated for 24h replicate3 treatment 1 year plant with leaves from China: linan, Merrillii, GR24_3 ILLUMINA 6787231800 bp
SRR18320952 RNA-Seq of Torreya grandis: nitrogen+GR24 treated for 72h replicate2 treatment 1 year plant with leaves from China: linan, Merrillii, N+GR72_2 ILLUMINA 6331219500 bp
SRR18320953 RNA-Seq of Torreya grandis: nitrogen+GR24 treated for 72h replicate1 treatment 1 year plant with leaves from China: linan, Merrillii, N+GR72_1 ILLUMINA 6411328800 bp
SRR18320954 RNA-Seq of Torreya grandis: GR24treated for 72h replicate3 treatment 1 year plant with leaves from China: linan, Merrillii, GR72_3 ILLUMINA 6792469800 bp
SRR18320955 RNA-Seq of Torreya grandis: GR24treated for 72h replicate2 treatment 1 year plant with leaves from China: linan, Merrillii, GR72_2 ILLUMINA 6707294100 bp
SRR18320956 RNA-Seq of Torreya grandis: GR24treated for 72h replicate1 treatment 1 year plant with leaves from China: linan, Merrillii, GR72_1 ILLUMINA 6086581200 bp
SRR18320957 RNA-Seq of Torreya grandis: nitrogen treated for 72h replicate3 treatment 1 year plant with leaves from China: linan, Merrillii, N72_3 ILLUMINA 6711111900 bp
SRR18320958 RNA-Seq of Torreya grandis: nitrogen treated for 72h replicate2 treatment 1 year plant with leaves from China: linan, Merrillii, N72_2 ILLUMINA 6950114400 bp
SRR18320959 RNA-Seq of Torreya grandis: nitrogen treated for 72h replicate1 treatment 1 year plant with leaves from China: linan, Merrillii, N72_1 ILLUMINA 6139903800 bp
SRR18320960 RNA-Seq of Torreya grandis: nitrogen+GR24 treated for 24h replicate3 treatment 1 year plant with leaves from China: linan, Merrillii, N+GR24_3 ILLUMINA 6540613200 bp
SRR18320961 RNA-Seq of Torreya grandis: nitrogen+GR24 treated for 24h replicate2 treatment 1 year plant with leaves from China: linan, Merrillii, N+GR24_2 ILLUMINA 6415764000 bp
SRR18320962 RNA-Seq of Torreya grandis: control replicate2 treatment 1 year plant with leaves from China: linan, Merrillii, CK2 ILLUMINA 6678320400 bp
PRJNA924964 Transcriptome data of Torreya grandis seedlings -
9
Library Title Platform Total Base VCF File
SRR23105320 RNA-Seq of Torreya grandis: leaf, D60-3 ILLUMINA 6898422300 bp
SRR23105321 RNA-Seq of Torreya grandis: leaf, D60-2 ILLUMINA 7120742100 bp
SRR23105322 RNA-Seq of Torreya grandis: leaf, D60-1 ILLUMINA 6591408600 bp
SRR23105323 RNA-Seq of Torreya grandis: leaf, D40-3 ILLUMINA 7201698600 bp
SRR23105324 RNA-Seq of Torreya grandis: leaf, D40-2 ILLUMINA 6798465000 bp
SRR23105325 RNA-Seq of Torreya grandis: leaf, D40-1 ILLUMINA 7088107500 bp
SRR23105326 RNA-Seq of Torreya grandis: leaf, CK-3 ILLUMINA 6940029600 bp
SRR23105327 RNA-Seq of Torreya grandis: leaf, CK-2 ILLUMINA 7032613950 bp
SRR23105328 RNA-Seq of Torreya grandis: leaf, CK-1 ILLUMINA 6338467500 bp

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