Bioproject |
Description |
Publication |
GVCF File |
Library Num. |
PRJEB21674 |
1000 Plant (1KP) Transcriptomes: The Remaining Data |
Vong et al., 2019 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
ERR2040531 |
RNA-Seq of Eucommia ulmoides: leaves, SZUO |
ILLUMINA |
2057701680 bp |
|
|
PRJNA1045016 |
Transcriptome sequencing of Eucommia ulmoides seeds at different stages of germination |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR26945922 |
RNA-Seq of Eucommia ulmoides: newly germinated seeds after cutting the endosperm from China:Anhui Province, DZ5_3 |
ILLUMINA |
5570353760 bp |
|
SRR26945923 |
RNA-Seq of Eucommia ulmoides: newly germinated seeds after cutting the endosperm from China:Anhui Province, DZ5_2 |
ILLUMINA |
6361728754 bp |
|
SRR26945924 |
RNA-Seq of Eucommia ulmoides: newly germinated seeds after cutting the endosperm from China:Anhui Province, DZ5_1 |
ILLUMINA |
6072879344 bp |
|
SRR26945925 |
RNA-Seq of Eucommia ulmoides: peeled seeds absorbed water for 4 days from China:Anhui Province, DZ4_3 |
ILLUMINA |
5839163658 bp |
|
SRR26945926 |
RNA-Seq of Eucommia ulmoides: peeled seeds absorbed water for 4 days from China:Anhui Province, DZ4_2 |
ILLUMINA |
6094296882 bp |
|
SRR26945927 |
RNA-Seq of Eucommia ulmoides: peeled seeds absorbed water for 4 days from China:Anhui Province, DZ4_1 |
ILLUMINA |
6374033442 bp |
|
SRR26945928 |
RNA-Seq of Eucommia ulmoides: peeled seeds absorbed water for 2 days from China:Anhui Province, DZ2_3 |
ILLUMINA |
6100969874 bp |
|
SRR26945929 |
RNA-Seq of Eucommia ulmoides: peeled seeds absorbed water for 2 days from China:Anhui Province, DZ2_2 |
ILLUMINA |
6770888622 bp |
|
SRR26945930 |
RNA-Seq of Eucommia ulmoides: peeled seeds absorbed water for 2 days from China:Anhui Province, DZ2_1 |
ILLUMINA |
6431591622 bp |
|
|
PRJNA293140 |
Transcriptome of Eucommia. ulmoides female and male flower buds |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR2175826 |
RNA-Seq of Eucommia ulmoides: male adault plant with flower bud from China: Zhengzhou, SNJ |
ILLUMINA |
5007182040 bp |
|
SRR2175827 |
RNA-Seq of Eucommia ulmoides: female adault plant with flower bud from China: Zhengzhou, BJC |
ILLUMINA |
5036922540 bp |
|
|
PRJNA314294 |
Eucommia ulmoides Raw sequence reads |
Feng et al., 2016 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR3203241 |
RNA-Seq of Eucommia ulmoides: kernels from China: Song country\, Luoyang City\, Henan Province, Huazhong No_6 |
ILLUMINA |
3407595985 bp |
|
SRR3203265 |
RNA-Seq of Eucommia ulmoides: kernels from China: Song country\, Luoyang City\, Henan Province, Huazhong No_6 |
ILLUMINA |
3943647206 bp |
|
SRR3203266 |
RNA-Seq of Eucommia ulmoides: kernels from China: Ruyang country\, Luoyang City\, Henan Province, Huazhong No_10 |
ILLUMINA |
3207005327 bp |
|
SRR3203268 |
RNA-Seq of Eucommia ulmoides: kernels from China: Ruyang country\, Luoyang City\, Henan Province, Huazhong No_10 |
ILLUMINA |
4144299643 bp |
|
|
PRJNA329457 |
To investigate changes in the E. ulmoides transcriptome in response to salt stress. |
Qing et al., 2021 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR3928253 |
RNA-Seq of Eucommia ulmoides: seedling salt stress responsiveness plant with leaf from China, Eu0h_1_1.clean.fq |
ILLUMINA |
27338964533 bp |
|
|
PRJNA357336 |
Eucommia ulmoides Genome sequencing and assembly |
Wuyun |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR5133409 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with leaf3 from China: Zhengzhou, EuL518_1 |
ILLUMINA |
340367050 bp |
|
SRR5133410 |
RNA-Seq of Eucommia ulmoides: Shennongjia male mature stage plant treated by biological replicate 1 with bark7 from China: Zhengzhou, EuB1.1 |
ILLUMINA |
9364861500 bp |
|
SRR5133411 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with fruit1 from China: Zhengzhou, EuF418_1 |
ILLUMINA |
386133700 bp |
|
SRR5133412 |
RNA-Seq of Eucommia ulmoides: Shennongjia male plant treated by biological replicate 1 with leaf13 from China: Hubei, SNJ_ye_L2_I040 |
ILLUMINA |
6278063000 bp |
|
SRR5133413 |
RNA-Seq of Eucommia ulmoides: Shennongjia male plant treated by biological replicate 1 with flower1 from China: Hubei, SNJ_H1_H2 |
ILLUMINA |
2503081000 bp |
|
SRR5133414 |
RNA-Seq of Eucommia ulmoides: Shennongjia male plant treated by biological replicate 2 with flower2 from China: Hubei, SNJ_hua_L2_I037 |
ILLUMINA |
6672013200 bp |
|
SRR5133415 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with bark4 from China: Zhengzhou, EuB720_2 |
ILLUMINA |
317931950 bp |
|
SRR5133416 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with fruit6 from China: Zhengzhou, EuF617_2 |
ILLUMINA |
333491250 bp |
|
SRR5133417 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with fruit3 from China: Zhengzhou, EuF518_1 |
ILLUMINA |
330457750 bp |
|
SRR5133418 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with fruit7 from China: Zhengzhou, EuF717_1 |
ILLUMINA |
332190950 bp |
|
SRR5133419 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with leaf10 from China: Zhengzhou, EuL816_2 |
ILLUMINA |
362398650 bp |
|
SRR5133420 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with bark5 from China: Zhengzhou, EuB920_1 |
ILLUMINA |
337204250 bp |
|
SRR5133421 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with fruit2 from China: Zhengzhou, EuF418_2 |
ILLUMINA |
342984700 bp |
|
SRR5133422 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with bark2 from China: Zhengzhou, EuB520_2 |
ILLUMINA |
324949950 bp |
|
SRR5133423 |
RNA-Seq of Eucommia ulmoides: Shennongjia male mature stage plant treated by biological replicate 2 with bark8 from China: Zhengzhou, EuB1.2 |
ILLUMINA |
10932367800 bp |
|
SRR5133424 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with fruit8 from China: Zhengzhou, EuF717_2 |
ILLUMINA |
331268050 bp |
|
SRR5133425 |
RNA-Seq of Eucommia ulmoides: Shennongjia male plant treated by biological replicate 2 with leaf14 from China: Hubei, SNJ_ye_L2_I20040 |
ILLUMINA |
2894385600 bp |
|
SRR5133426 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with leaf1 from China: Zhengzhou, EuL418_1 |
ILLUMINA |
357873400 bp |
|
SRR5133427 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with leaf5 from China: Zhengzhou, EuL617_1 |
ILLUMINA |
342687550 bp |
|
SRR5133428 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with bark3 from China: Zhengzhou, EuB720_1 |
ILLUMINA |
365143600 bp |
|
SRR5133432 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with leaf8 from China: Zhengzhou, EuL717_2 |
ILLUMINA |
321971650 bp |
|
SRR5133433 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with leaf4 from China: Zhengzhou, EuL518_2 |
ILLUMINA |
302891550 bp |
|
SRR5133434 |
RNA-Seq of Eucommia ulmoides: Shennongjia male plant with stem from China: Hubei, SNJ_J1 |
ILLUMINA |
2629796800 bp |
|
SRR5133435 |
RNA-Seq of Eucommia ulmoides: Shennongjia male plant with root from China: Hubei, SNJ_G2 |
ILLUMINA |
2236891000 bp |
|
SRR5133436 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with leaf12 from China: Zhengzhou, EuL920_2 |
ILLUMINA |
346846150 bp |
|
SRR5133437 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with leaf6 from China: Zhengzhou, EuL617_2 |
ILLUMINA |
333307650 bp |
|
SRR5133438 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with leaf9 from China: Zhengzhou, EuL816_1 |
ILLUMINA |
317896950 bp |
|
SRR5133439 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with fruit5 from China: Zhengzhou, EuF617_1 |
ILLUMINA |
341930150 bp |
|
SRR5133440 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with fruit9 from China: Zhengzhou, EuF816_1 |
ILLUMINA |
339380800 bp |
|
SRR5133441 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with bark1 from China: Zhengzhou, EuB520_1 |
ILLUMINA |
340892100 bp |
|
SRR5133442 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with fruit10 from China: Zhengzhou, EuF816_2 |
ILLUMINA |
302639900 bp |
|
SRR5133443 |
RNA-Seq of Eucommia ulmoides: Shennongjia male plant treated by biological replicate 3 with flower3 from China: Hubei, SNJ_hua_L2_I20037 |
ILLUMINA |
3111297200 bp |
|
SRR5133444 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with bark6 from China: Zhengzhou, EuB920_2 |
ILLUMINA |
406439900 bp |
|
SRR5133445 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with fruit12 from China: Zhengzhou, EuF920_2 |
ILLUMINA |
341872200 bp |
|
SRR5133446 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with fruit4 from China: Zhengzhou, EuF518_2 |
ILLUMINA |
356308000 bp |
|
SRR5133447 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with leaf7 from China: Zhengzhou, EuL717_1 |
ILLUMINA |
342752200 bp |
|
SRR5133448 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 2 with leaf2 from China: Zhengzhou, EuL418_2 |
ILLUMINA |
368121550 bp |
|
SRR5133449 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with fruit11 from China: Zhengzhou, EuF920_1 |
ILLUMINA |
350674200 bp |
|
SRR5133450 |
RNA-Seq of Eucommia ulmoides: HuaZhong6Hao female mature stage plant treated by biological replicate 1 with leaf11 from China: Zhengzhou, EuL920_1 |
ILLUMINA |
405806300 bp |
|
|
PRJNA399774 |
Eucommia ulmoides Raw sequence reads |
Wang et al., 2017 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR5965201 |
RNA-Seq of Eucommia ulmoides: mature plant with leaf from China: Yangling, EUCO_M1 |
ILLUMINA |
7894289400 bp |
|
SRR6175429 |
RNA-Seq of Eucommia ulmoides: mature plant with leaf from China: Yangling, EUCO_M1 |
ILLUMINA |
17360066700 bp |
|
SRR6175430 |
RNA-Seq of Eucommia ulmoides: leaf from China, EUCO_F1 |
ILLUMINA |
23815120800 bp |
|
SRR6175431 |
RNA-Seq of Eucommia ulmoides: mature plant with leaf from China: Yangling, EUCO_M1 |
ILLUMINA |
23815120800 bp |
|
|
PRJNA486424 |
Transcriptome analysis reveals the mechanism of chlorogenic acid biosynthesis in Eucommia ulmoides Oliv. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR7719365 |
RNA-Seq of Eucommia ulmoides: six years old maturation stage low contents of chlorogenic acid and Eu-rubber (biological replicate 3) plant with leaf from China: yangling\, Shannxi, L03 |
ILLUMINA |
7097064766 bp |
|
SRR7719366 |
RNA-Seq of Eucommia ulmoides: six years old maturation stage low contents of chlorogenic acid and Eu-rubber (biological replicate 2) plant with leaf from China: yangling\, Shannxi, L02 |
ILLUMINA |
7627677198 bp |
|
SRR7719367 |
RNA-Seq of Eucommia ulmoides: six years old maturation stage low contents of chlorogenic acid and Eu-rubber (biological replicate 1) plant with leaf from China: yangling\, Shannxi, L01 |
ILLUMINA |
7933272780 bp |
|
SRR7719368 |
RNA-Seq of Eucommia ulmoides: six years old maturation stage high contents of chlorogenic acid and Eu-rubber (biological replicate 3) plant with leaf from China: yangling\, Shannxi, H03 |
ILLUMINA |
8047315932 bp |
|
SRR7719369 |
RNA-Seq of Eucommia ulmoides: six years old maturation stage high contents of chlorogenic acid and Eu-rubber (biological replicate 2) plant with leaf from China: yangling\, Shannxi, H02 |
ILLUMINA |
8551021682 bp |
|
SRR7719370 |
RNA-Seq of Eucommia ulmoides: six years old maturation stage high contents of chlorogenic acid and Eu-rubber (biological replicate 1) plant with leaf from China: yangling\, Shannxi, H01 |
ILLUMINA |
6362752580 bp |
|
|
PRJNA490871 |
Two Eucommia ulmoides transcriptomes were sequenced by RNA-seq using the Illumina Hiseq 2000 with leaves and fruits from the cultivar “Qinzhong No. 3”, respectively. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR7829610 |
RNA-Seq of Eucommia ulmoides: mixed culture female mature trees with leaves from China: Yangling\, Shaanxi, Qinzhong No. 3, Eu-L |
ILLUMINA |
6580739000 bp |
|
SRR7829611 |
RNA-Seq of Eucommia ulmoides: mixed culture female mature trees with fruits from China: Yangling\, Shaanxi, Qinzhong No. 3, Eu-F |
ILLUMINA |
6697630000 bp |
|
|
PRJNA559770 |
Long-read transcriptome and short-read transcriptome |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR9949126 |
RNA-Seq of Eucommia ulmoides: plant treated by treat3-2 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T12 |
ILLUMINA |
6382013848 bp |
|
SRR9949127 |
RNA-Seq of Eucommia ulmoides: plant treated by treat3-3 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T13 |
ILLUMINA |
7353307162 bp |
|
SRR9949128 |
RNA-Seq of Eucommia ulmoides: plant treated by treat2-1 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T07 |
ILLUMINA |
6129444894 bp |
|
SRR9949129 |
RNA-Seq of Eucommia ulmoides: plant treated by treat2-2 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T08 |
ILLUMINA |
6714699818 bp |
|
SRR9949130 |
RNA-Seq of Eucommia ulmoides: plant treated by treat1-2 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T05 |
ILLUMINA |
6694499502 bp |
|
SRR9949131 |
RNA-Seq of Eucommia ulmoides: plant treated by treat1-3 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T06 |
ILLUMINA |
7826459380 bp |
|
SRR9949132 |
RNA-Seq of Eucommia ulmoides: plant treated by CK3 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T03 |
ILLUMINA |
6207765592 bp |
|
SRR9949133 |
RNA-Seq of Eucommia ulmoides: plant treated by treat1-1 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T04 |
ILLUMINA |
6345657084 bp |
|
SRR9949134 |
RNA-Seq of Eucommia ulmoides: plant treated by CK1 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T01 |
ILLUMINA |
6608280364 bp |
|
SRR9949135 |
RNA-Seq of Eucommia ulmoides: plant treated by CK2 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T02 |
ILLUMINA |
6447529932 bp |
|
SRR9949136 |
RNA-Seq of Eucommia ulmoides: plant treated by treat2-3 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T09 |
ILLUMINA |
6450887064 bp |
|
SRR9949137 |
RNA-Seq of Eucommia ulmoides: plant treated by treat3-1 with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver, T11 |
ILLUMINA |
6538878746 bp |
|
|
PRJNA560985 |
Eucommia ulmoides leaf long-read transcriptome |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR10001141 |
RNA-Seq of Eucommia ulmoides: CK1 treatment plant with leaf from China:Shaanxi\,Yangling, Eucommia ulmoides Oliver,All |
PACBIO_SMRT |
1506384738 bp |
|
|
PRJNA599775 |
Report the acquisitation of a high-quality haploid genome assembly for first time from a tree species |
Li et al., 2020 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR10854870 |
RNA-Seq of Eucommia ulmoides: mature stage 10 years old plant with leaf from China: weixian\, Hebei, Weixian diploid (biological replicate 3), M13 |
ILLUMINA |
7127473800 bp |
|
SRR10854871 |
RNA-Seq of Eucommia ulmoides: mature stage 10 years old plant with leaf from China: weixian\, Hebei, Weixian diploid (biological replicate 2), M12 |
ILLUMINA |
9036378000 bp |
|
SRR10854872 |
RNA-Seq of Eucommia ulmoides: mature stage 10 years old plant with leaf from China: weixian\, Hebei, Weixian diploid (biological replicate 1), M11 |
ILLUMINA |
7069070400 bp |
|
SRR10855012 |
RNA-Seq of Eucommia ulmoides: mature stage 10 years old plant with Central Peel from China: weixian\, Hebei, Weixian diploid (biological replicate 3), M23 |
ILLUMINA |
7038649500 bp |
|
SRR10855013 |
RNA-Seq of Eucommia ulmoides: mature stage 10 years old plant with Central Peel from China: weixian\, Hebei, Weixian diploid (biological replicate 2), M22 |
ILLUMINA |
7773975600 bp |
|
SRR10855014 |
RNA-Seq of Eucommia ulmoides: mature stage 10 years old plant with Central Peel from China: weixian\, Hebei, Weixian diploid (biological replicate 1), M21 |
ILLUMINA |
6594237900 bp |
|
SRR10861702 |
RNA-Seq of Eucommia ulmoides: mature stage 10 years old plant with the edges of peels from China: weixian\, Hebei, Weixian diploid (biological replicate 3), M33 |
ILLUMINA |
6982230300 bp |
|
SRR10861703 |
RNA-Seq of Eucommia ulmoides: mature stage 10 years old plant with the edges of peels from China: weixian\, Hebei, Weixian diploid (biological replicate 2), M32 |
ILLUMINA |
7032567300 bp |
|
SRR10861704 |
RNA-Seq of Eucommia ulmoides: mature stage 10 years old plant with the edges of peels from China: weixian\, Hebei, Weixian diploid (biological replicate 1), M31 |
ILLUMINA |
8406344400 bp |
|
SRR10861980 |
RNA-Seq of Eucommia ulmoides: 43617 10 years old plant with Xylem from China: weixian\, Hebei, Weixian diploid (biological replicate 3), M43 |
ILLUMINA |
7049224800 bp |
|
SRR10861981 |
RNA-Seq of Eucommia ulmoides: 43617 10 years old plant with Xylem from China: weixian\, Hebei, Weixian diploid (biological replicate 2), M42 |
ILLUMINA |
7621775100 bp |
|
SRR10861982 |
RNA-Seq of Eucommia ulmoides: 43617 10 years old plant with Xylem from China: weixian\, Hebei, Weixian diploid (biological replicate 1), M41 |
ILLUMINA |
6776082000 bp |
|
SRR10863225 |
RNA-Seq of Eucommia ulmoides: 43617 10 years old plant with Seed from China: weixian\, Hebei, Weixian diploid (biological replicate 3), M53 |
ILLUMINA |
7552897800 bp |
|
SRR10863226 |
RNA-Seq of Eucommia ulmoides: 43617 10 years old plant with Seed from China: weixian\, Hebei, Weixian diploid (biological replicate 2), M52 |
ILLUMINA |
8649891900 bp |
|
SRR10863227 |
RNA-Seq of Eucommia ulmoides: 43617 10 years old plant with Seed from China: weixian\, Hebei, Weixian diploid (biological replicate 1), M51 |
ILLUMINA |
7754027100 bp |
|
|
PRJNA636634 |
Using genomic and transcriptomic data to study the phylogeny, WGD and evoulution of the asterids |
Zhang et al., 2020 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR11921648 |
RNA-Seq of Eucommia ulmoides: leaves, specimen voucher=FUS: Hong Ma L24, L24 |
ILLUMINA |
5162355900 bp |
|
|
PRJNA745271 |
Eucommia ulmoides RNAseq |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR15100425 |
RNA-Seq of Eucommia ulmoides: mature plant with red leaf from China:Henan, Hongye Eucommia, H5-1R1 |
ILLUMINA |
7177212500 bp |
|
SRR15100426 |
RNA-Seq of Eucommia ulmoides: tender plant with green leaf from China:Henan, Hongye Eucommia, H1-2R1 |
ILLUMINA |
6149594625 bp |
|
SRR15100427 |
RNA-Seq of Eucommia ulmoides: tender plant with green leaf from China:Henan, Hongye Eucommia, H1-1R1 |
ILLUMINA |
7389454500 bp |
|
SRR15100428 |
RNA-Seq of Eucommia ulmoides: mature plant with red leaf from China:Henan, Hongye Eucommia, H5-2R1 |
ILLUMINA |
8120824750 bp |
|
|
PRJNA792509 |
Eucommia ulmoides transcriptome sequencing raw data |
Du et al., 2023 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR17345235 |
RNA-Seq of Eucommia ulmoides: male Huazhong No. 11 buds during floral organ morphological differentiation initial stage_biological replicate 1 from China:Henan, M11-2-1 |
ILLUMINA |
6444212792 bp |
|
SRR17345236 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 6 buds during floral organ morphological differentiation initial stage_biological replicate 3 from China:Henan, F6-2-3 |
ILLUMINA |
6415496318 bp |
|
SRR17345237 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 6 buds during floral organ morphological differentiation initial stage_biological replicate 2 from China:Henan, F6-2-2 |
ILLUMINA |
6166609752 bp |
|
SRR17345238 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 6 buds during floral organ morphological differentiation initial stage_biological replicate 1 from China:Henan, F6-2-1 |
ILLUMINA |
5960049848 bp |
|
SRR17345239 |
RNA-Seq of Eucommia ulmoides: male Huazhong No. 11 buds during floral organ induction stage_biological replicate 3 from China:Henan, M11-1-3 |
ILLUMINA |
7527337834 bp |
|
SRR17345240 |
RNA-Seq of Eucommia ulmoides: male Huazhong No. 11 buds during floral organ induction stage_biological replicate 2 from China:Henan, M11-1-2 |
ILLUMINA |
7058708552 bp |
|
SRR17345241 |
RNA-Seq of Eucommia ulmoides: male Huazhong No. 11 buds during floral organ induction stage_biological replicate 1 from China:Henan, M11-1-1 |
ILLUMINA |
6628747548 bp |
|
SRR17345243 |
RNA-Seq of Eucommia ulmoides: male Huazhong No. 11 buds during flower organ maturity stage_biological replicate 3 from China:Henan, M11-3-3 |
ILLUMINA |
6674451200 bp |
|
SRR17345245 |
RNA-Seq of Eucommia ulmoides: male Huazhong No. 11 buds during flower organ maturity stage_biological replicate 1 from China:Henan, M11-3-1 |
ILLUMINA |
6612153904 bp |
|
SRR17345246 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 6 buds during flower organ maturity stage_biological replicate 3 from China:Henan, F6-3-3 |
ILLUMINA |
8128418580 bp |
|
SRR17345248 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 6 buds during flower organ maturity stage_biological replicate 1 from China:Henan, F6-3-1 |
ILLUMINA |
7168551688 bp |
|
SRR17345249 |
RNA-Seq of Eucommia ulmoides: male Huazhong No. 11 buds during floral organ morphological differentiation initial stage_biological replicate 3 from China:Henan, M11-2-3 |
ILLUMINA |
6729748082 bp |
|
SRR17345250 |
RNA-Seq of Eucommia ulmoides: male Huazhong No. 11 buds during floral organ morphological differentiation initial stage_biological replicate 2 from China:Henan, M11-2-2 |
ILLUMINA |
6087883502 bp |
|
SRR17345251 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 6 buds during floral organ induction stage_biological replicate 2 from China:Henan, F6-1-2 |
ILLUMINA |
6875878824 bp |
|
SRR17345242 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 6 buds during floral organ induction stage_biological replicate 3 from China:Henan, F6-1-3 |
ILLUMINA |
36002582960 bp |
|
SRR17345244 |
RNA-Seq of Eucommia ulmoides: male Huazhong No. 11 buds during flower organ maturity stage_biological replicate 2 from China:Henan, M11-3-2 |
ILLUMINA |
7609816678 bp |
|
SRR17345247 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 6 buds during flower organ maturity stage_biological replicate 2 from China:Henan, F6-3-2 |
ILLUMINA |
7418330154 bp |
|
SRR17345252 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 6 buds during floral organ induction stage_biological replicate 1 from China:Henan, F6-1-1 |
ILLUMINA |
6681730678 bp |
|
SRR17333999 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 8 bark from China:Henan, Sample_R17011655 |
ILLUMINA |
8575313700 bp |
|
SRR17334000 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 8 leaf from China:Henan, Sample_R17011654 |
ILLUMINA |
7313271000 bp |
|
SRR17334002 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 8 fruit from China:Henan, Sample_R17011652 |
ILLUMINA |
6747042600 bp |
|
SRR17334001 |
RNA-Seq of Eucommia ulmoides: female Huazhong No. 8 stem from China:Henan, Sample_R17011653 |
ILLUMINA |
7298415600 bp |
|
|
PRJNA878775 |
Eucommia ulmoides Transcriptome or Gene expression |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR21517679 |
RNA-Seq of Eucommia ulmoides: a years old plant with lower leaves from China:chengdu, D1 |
ILLUMINA |
6000781636 bp |
|
SRR21517680 |
RNA-Seq of Eucommia ulmoides: a years old plant with middle and lower leaves from China:chengdu, C3 |
ILLUMINA |
6129721470 bp |
|
SRR21517681 |
RNA-Seq of Eucommia ulmoides: a years old plant with middle and lower leaves from China:chengdu, C2 |
ILLUMINA |
6032220332 bp |
|
SRR21517682 |
RNA-Seq of Eucommia ulmoides: a years old plant with middle and lower leaves from China:chengdu, C1 |
ILLUMINA |
6562524712 bp |
|
SRR21517683 |
RNA-Seq of Eucommia ulmoides: a years old plant with close to the tip of the leaf from China:chengdu, B3 |
ILLUMINA |
6558552896 bp |
|
SRR21517684 |
RNA-Seq of Eucommia ulmoides: a years old plant with close to the tip of the leaf from China:chengdu, B2 |
ILLUMINA |
6046454002 bp |
|
SRR21517685 |
RNA-Seq of Eucommia ulmoides: a years old plant with close to the tip of the leaf from China:chengdu, B1 |
ILLUMINA |
5864361278 bp |
|
SRR21517686 |
RNA-Seq of Eucommia ulmoides: a years old plant with top leaves from China:chengdu, A3 |
ILLUMINA |
6392671356 bp |
|
SRR21517687 |
RNA-Seq of Eucommia ulmoides: a years old plant with skin from China:chengdu, E3 |
ILLUMINA |
6871940880 bp |
|
SRR21517688 |
RNA-Seq of Eucommia ulmoides: a years old plant with skin from China:chengdu, E2 |
ILLUMINA |
6393546140 bp |
|
SRR21517689 |
RNA-Seq of Eucommia ulmoides: a years old plant with skin from China:chengdu, E1 |
ILLUMINA |
6939710928 bp |
|
SRR21517690 |
RNA-Seq of Eucommia ulmoides: a years old plant with lower leaves from China:chengdu, D3 |
ILLUMINA |
6281263262 bp |
|
SRR21517691 |
RNA-Seq of Eucommia ulmoides: a years old plant with lower leaves from China:chengdu, D2 |
ILLUMINA |
6278064018 bp |
|
SRR21517692 |
RNA-Seq of Eucommia ulmoides: a years old plant with top leaves from China:chengdu, A2 |
ILLUMINA |
7079285870 bp |
|
SRR21517693 |
RNA-Seq of Eucommia ulmoides: a years old plant with top leaves from China:chengdu, A1 |
ILLUMINA |
6496272604 bp |
|
|
PRJNA895831 |
normal sequencing of Eucommia ulmoides Oliv. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR22105511 |
RNA-Seq of Eucommia ulmoides: replicate = R-T1 biological replicate 2 treatment plant with root from China, Huazhong 6, R-T1-2 |
ILLUMINA |
6260665800 bp |
|
SRR22105513 |
RNA-Seq of Eucommia ulmoides: replicate = L-T3 biological replicate 3 treatment plant with leaf from China, Huazhong 6, L-T3-3 |
ILLUMINA |
6225728700 bp |
|
SRR22105519 |
RNA-Seq of Eucommia ulmoides: replicate = R-T3 biological replicate 3 treatment plant with root from China, Huazhong 6, R-T3-3 |
ILLUMINA |
6037851900 bp |
|
SRR22105520 |
RNA-Seq of Eucommia ulmoides: replicate = R-T3 biological replicate 2 treatment plant with root from China, Huazhong 6, R-T3-2 |
ILLUMINA |
6155586000 bp |
|
SRR22105521 |
RNA-Seq of Eucommia ulmoides: replicate = R-T3 biological replicate 1 treatment plant with root from China, Huazhong 6, R-T3-1 |
ILLUMINA |
6374435100 bp |
|
SRR22105523 |
RNA-Seq of Eucommia ulmoides: replicate = R-T2 biological replicate 2 treatment plant with root from China, Huazhong 6, R-T2-2 |
ILLUMINA |
6240765000 bp |
|
SRR22105525 |
RNA-Seq of Eucommia ulmoides: replicate = R-T1 biological replicate 3 treatment plant with root from China, Huazhong 6, R-T1-3 |
ILLUMINA |
6214451700 bp |
|
SRR22105527 |
RNA-Seq of Eucommia ulmoides: replicate = L-T1 biological replicate 1 treatment plant with leaf from China, Huazhong 6, L-T1-1 |
ILLUMINA |
6152163600 bp |
|
SRR22105512 |
RNA-Seq of Eucommia ulmoides: replicate = R-T1 biological replicate 1 treatment plant with root from China, Huazhong 6, R-T1-1 |
ILLUMINA |
6245577600 bp |
|
SRR22105514 |
RNA-Seq of Eucommia ulmoides: replicate = L-T3 biological replicate 2 treatment plant with leaf from China, Huazhong 6, L-T3-2 |
ILLUMINA |
6348478800 bp |
|
SRR22105515 |
RNA-Seq of Eucommia ulmoides: replicate = L-T3 biological replicate 1 treatment plant with leaf from China, Huazhong 6, L-T3-1 |
ILLUMINA |
6190113000 bp |
|
SRR22105516 |
RNA-Seq of Eucommia ulmoides: replicate = L-T2 biological replicate 3 treatment plant with leaf from China, Huazhong 6, L-T2-3 |
ILLUMINA |
6148818300 bp |
|
SRR22105517 |
RNA-Seq of Eucommia ulmoides: replicate = L-T2 biological replicate 2 treatment plant with leaf from China, Huazhong 6, L-T2-2 |
ILLUMINA |
6375810600 bp |
|
SRR22105518 |
RNA-Seq of Eucommia ulmoides: replicate = L-T1 biological replicate 3 treatment plant with leaf from China, Huazhong 6, L-T1-3 |
ILLUMINA |
6193819200 bp |
|
SRR22105522 |
RNA-Seq of Eucommia ulmoides: replicate = R-T2 biological replicate 3 treatment plant with root from China, Huazhong 6, R-T2-3 |
ILLUMINA |
6199031100 bp |
|
SRR22105524 |
RNA-Seq of Eucommia ulmoides: replicate = R-T2 biological replicate 1 treatment plant with root from China, Huazhong 6, R-T2-1 |
ILLUMINA |
6251376600 bp |
|
SRR22105526 |
RNA-Seq of Eucommia ulmoides: replicate = L-T1 biological replicate 2 treatment plant with leaf from China, Huazhong 6, L-T1-2 |
ILLUMINA |
6324979200 bp |
|
|
PRJNA952834 |
16s and ITS high-throughput amplicon sequencing data |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR24089884 |
RNA-Seq of Eucommia ulmoides: leaf and root from China: Guizhou, Bacteria |
ILLUMINA |
12266489 bp |
|
SRR24089885 |
RNA-Seq of Eucommia ulmoides: leaf and root from China: Guizhou, Fungi |
ILLUMINA |
1934886 bp |
|
|
PRJNA958614 |
Study on transcriptome Changes of Eucommia ulmoides under Drought Stress |
Wang et al., 2023 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR24284121 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, C1 |
DNBSEQ |
6632052900 bp |
|
SRR24284122 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, B3 |
DNBSEQ |
6617638800 bp |
|
SRR24284123 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, B2 |
DNBSEQ |
6964693800 bp |
|
SRR24284124 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, B1 |
DNBSEQ |
6914643300 bp |
|
SRR24284125 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, A3 |
DNBSEQ |
6547785000 bp |
|
SRR24284126 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, A2 |
DNBSEQ |
6016665900 bp |
|
SRR24284127 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, A1 |
DNBSEQ |
6820944900 bp |
|
SRR24284128 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, CK3 |
DNBSEQ |
6165270600 bp |
|
SRR24284129 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, C3 |
DNBSEQ |
6943154100 bp |
|
SRR24284130 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, C2 |
DNBSEQ |
6792803100 bp |
|
SRR24284131 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, CK2 |
DNBSEQ |
6932719200 bp |
|
SRR24284132 |
RNA-Seq of Eucommia ulmoides: two years drought treatment plant with blade mesophyll cell from China:shihezi, CK1 |
DNBSEQ |
6216433200 bp |
|
|