Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
Others

Project

Bioproject Description Publication GVCF File Library Num.
PRJEB21674 1000 Plant (1KP) Transcriptomes: The Remaining Data Vong et al., 2019
418
Library Title Platform Total Base VCF File
ERR2040355 RNA-Seq of Juglans nigra: leaves, DXQW ILLUMINA 929102220 bp
PRJNA1004621 Pacbio Isoseq for Gene Annotation in Juglans -
419
Library Title Platform Total Base VCF File
SRR25617182 RNA-Seq of Juglans nigra: mature tree with flower from USA: Davis\, CA, Thomas, sample 2, jnig-flower-2 PACBIO_SMRT 750082035 bp
SRR25617184 RNA-Seq of Juglans nigra: mature tree with flower from USA: Davis\, CA, Thomas, sample 1, jnig-flower-1 PACBIO_SMRT 941925255 bp
SRR25617185 RNA-Seq of Juglans nigra: mature tree with catkin from USA: Davis\, CA, Thomas, sample 3, jnig-catkin-3 PACBIO_SMRT 587208809 bp
SRR25617186 RNA-Seq of Juglans nigra: mature tree with catkin from USA: Davis\, CA, Thomas, sample 2, jnig-catkin-2 PACBIO_SMRT 1195738714 bp
SRR25617187 RNA-Seq of Juglans nigra: mature tree with catkin from USA: Davis\, CA, Thomas, sample 1, jnig-catkin-1 PACBIO_SMRT 2994470699 bp
SRR25617188 RNA-Seq of Juglans nigra: mature tree with bark from USA: Davis\, CA, Thomas, sample 2, jnig-bark-2 PACBIO_SMRT 1108991695 bp
SRR25617189 RNA-Seq of Juglans nigra: mature tree with bark from USA: Davis\, CA, Thomas, sample 1, jnig-bark-1 PACBIO_SMRT 2328060374 bp
SRR25617190 RNA-Seq of Juglans nigra: mature tree with fruit from USA: Davis\, CA, Thomas, sample 2, jnig-fruit-2 PACBIO_SMRT 343837236 bp
SRR25617191 RNA-Seq of Juglans nigra: mature tree with fruit from USA: Davis\, CA, Thomas, sample 1, jnig-fruit-1 PACBIO_SMRT 1487515283 bp
SRR25617192 RNA-Seq of Juglans nigra: mature tree with leaf from USA: Davis\, CA, Thomas, jnig-leaf-1 PACBIO_SMRT 719416407 bp
PRJNA273267 Juglans nigra Transcriptome or Gene expression -
420
Library Title Platform Total Base VCF File
SRR1779028 RNA-Seq of Juglans nigra: 2 years old ozone exposure 80ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-10 ILLUMINA 201727333 bp
SRR1779029 RNA-Seq of Juglans nigra: 2 years old ozone exposure 125ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-11 ILLUMINA 202256668 bp
SRR1779030 RNA-Seq of Juglans nigra: 2 years old ozone exposure 225ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-12 ILLUMINA 204246072 bp
SRR1779031 RNA-Seq of Juglans nigra: 2 years old control chamber ozone 10ppb+ mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-9 ILLUMINA 204438746 bp
SRR1779032 RNA-Seq of Juglans nigra: 2 years old ozone exposure 80ppb for 14 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH10-14D ILLUMINA 75196490 bp
SRR1779033 RNA-Seq of Juglans nigra: 2 years old ozone exposure 80ppb for 28 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH10-28D ILLUMINA 57926922 bp
SRR1779034 RNA-Seq of Juglans nigra: 2 years old ozone exposure 80ppb for 7 hours treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH10-7hr ILLUMINA 72129680 bp
SRR1779035 RNA-Seq of Juglans nigra: 2 years old ozone exposure 125ppb for 14 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH11-14D ILLUMINA 79817392 bp
SRR1779036 RNA-Seq of Juglans nigra: 2 years old ozone exposure 125ppb for 28 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH11-28D ILLUMINA 82745584 bp
SRR1779037 RNA-Seq of Juglans nigra: 2 years old ozone exposure 125ppb for 7 hours treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH11-7hr ILLUMINA 84160756 bp
SRR1779038 RNA-Seq of Juglans nigra: 2 years old ozone exposure 225ppb for 14 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH12-14D ILLUMINA 68317232 bp
SRR1779039 RNA-Seq of Juglans nigra: 2 years old ozone exposure 225ppb for 28 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH12-28D ILLUMINA 69096392 bp
SRR1779040 RNA-Seq of Juglans nigra: 2 years old ozone exposure 225ppb for 7 hours treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH12-7hr ILLUMINA 62691576 bp
SRR1779041 RNA-Seq of Juglans nigra: 2 years old control chamber ozone 10ppb day14 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH9-14D ILLUMINA 67950604 bp
SRR1779042 RNA-Seq of Juglans nigra: 2 years old control chamber ozone 10ppb day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH9-28D ILLUMINA 66495266 bp
SRR1779043 RNA-Seq of Juglans nigra: 2 years old control chamber ozone 10ppb 7hr treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH9-7hr ILLUMINA 67233958 bp
SRR1779044 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with dormant twigs, BW D-19 ILLUMINA 217047889 bp
SRR1779045 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with undamaged leaves, BW D-20 ILLUMINA 192127827 bp
SRR1779046 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Schlesser plant with damaged leaves, BW D-21 ILLUMINA 153416149 bp
SRR1779047 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with undamaged twigs, BW D-22 ILLUMINA 211143703 bp
SRR1779048 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Schlesser plant with damaged twigs, BW D-23 ILLUMINA 186988159 bp
SRR1779049 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with green twigs/buds-this years growth, BW D-24 ILLUMINA 213298767 bp
SRR1779050 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with catkins (male flowers- very mature), BW D-28 ILLUMINA 195440232 bp
SRR1779051 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with dormant twigs, BW M-19 ILLUMINA 199435213 bp
SRR1779052 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with undamaged leaves, BW M-20 ILLUMINA 209603847 bp
SRR1779053 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Sparrow plant with damaged leaves, BW M-21 ILLUMINA 104807057 bp
SRR1779054 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with undamaged twigs, BW M-22 ILLUMINA 195626822 bp
SRR1779055 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Sparrow plant with damaged twigs, BW M-23 ILLUMINA 194450127 bp
SRR1779056 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with green twigs/buds-this years growth, BW M-24 ILLUMINA 253297039 bp
SRR1779057 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with catkins (male flowers-immature/not shed polen yet, BW M-28 ILLUMINA 207499385 bp
SRR1779058 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with female flowers, BW M-29 ILLUMINA 206947969 bp
SRR1779059 RNA-Seq of Juglans nigra: 2 years old ozone exposure 80ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-10 ILLUMINA 2330050608 bp
SRR1779060 RNA-Seq of Juglans nigra: 2 years old ozone exposure 125ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-11 ILLUMINA 1942422910 bp
SRR1779061 RNA-Seq of Juglans nigra: 2 years old ozone exposure 225ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-12 ILLUMINA 2476087114 bp
SRR1779062 RNA-Seq of Juglans nigra: 2 years old control chamber ozone 10ppb+ mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-9 ILLUMINA 1973153170 bp
SRR1779063 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with dormant twigs, BW D-19 ILLUMINA 2168451214 bp
SRR1779064 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with undamaged leaves, BW D-20 ILLUMINA 2316000296 bp
SRR1779065 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Schlesser plant with damaged leaves, BW D-21 ILLUMINA 2382348004 bp
SRR1779066 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with undamaged twigs, BW D-22 ILLUMINA 2285792206 bp
SRR1779067 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Schlesser plant with damaged twigs, BW D-23 ILLUMINA 2259498876 bp
SRR1779068 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with green twigs/buds-this years growth, BW D-24 ILLUMINA 2241860842 bp
SRR1779069 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with catkins (male flowers- very mature), BW D-28 ILLUMINA 2285913204 bp
SRR1779070 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with dormant twigs, BW M-19 ILLUMINA 2063918436 bp
SRR1779071 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with undamaged leaves, BW M-20 ILLUMINA 2559093156 bp
SRR1779072 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Sparrow plant with damaged leaves, BW M-21 ILLUMINA 1433806706 bp
SRR1779073 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with undamaged twigs, BW M-22 ILLUMINA 2290783020 bp
SRR1779074 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Sparrow plant with damaged twigs, BW M-23 ILLUMINA 2036282816 bp
SRR1779075 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with green twigs/buds-this years growth, BW M-24 ILLUMINA 3102046532 bp
SRR1779076 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with catkins (male flowers-immature/not shed polen yet, BW M-28 ILLUMINA 2560875806 bp
SRR1779077 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with female flowers, BW M-29 ILLUMINA 2552006188 bp
PRJNA422719 Using differential gene expression from multiple plant species to track plasticity in response to changing environments across ecosystems Marx et al., 2021
421
Library Title Platform Total Base VCF File
SRR6434976 RNA-Seq of Juglans nigra: August sample with leaf from USA: Massachusetts\, Harvard Forest, Juglans nigra 2016-038 ILLUMINA 6509962344 bp
SRR6434999 RNA-Seq of Juglans nigra: July sample with leaf from USA: Massachusetts\, Harvard Forest, Juglans nigra 2016-002 ILLUMINA 17525960575 bp
PRJNA436029 Transcriptomics profiling of black-walnut (Juglans nigra) leaf and root samples -
422
Library Title Platform Total Base VCF File
SRR6784738 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with leaf2 from USA: Martell Forest\, West Lafayette\, IN, leaf_replicate2 ILLUMINA 6433258789 bp
SRR6784739 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with leaf1 from USA: Martell Forest\, West Lafayette\, IN, leaf_replicate1 ILLUMINA 8217898411 bp
SRR6784740 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with root1 from USA: Martell Forest\, West Lafayette\, IN, Root_replicate1 ILLUMINA 7142006536 bp
SRR6784741 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with leaf3 from USA: Martell Forest\, West Lafayette\, IN, leaf_replicate3 ILLUMINA 7107641895 bp
SRR6784742 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with root3 from USA: Martell Forest\, West Lafayette\, IN, Root_replicate3 ILLUMINA 7142624762 bp
SRR6784743 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with root2 from USA: Martell Forest\, West Lafayette\, IN, Root_replicate2 ILLUMINA 6760584419 bp

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