Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJEB21674 1000 Plant (1KP) Transcriptomes: The Remaining Data Vong et al., 2019
1
Library Title Platform Total Base VCF File
ERR2040355 RNA-Seq of Juglans nigra: leaves, DXQW ILLUMINA 929102220 bp
PRJNA1004621 Pacbio Isoseq for Gene Annotation in Juglans -
10
Library Title Platform Total Base VCF File
SRR25617182 RNA-Seq of Juglans nigra: mature tree with flower from USA: Davis\, CA, Thomas, sample 2, jnig-flower-2 PACBIO_SMRT 750082035 bp
SRR25617184 RNA-Seq of Juglans nigra: mature tree with flower from USA: Davis\, CA, Thomas, sample 1, jnig-flower-1 PACBIO_SMRT 941925255 bp
SRR25617185 RNA-Seq of Juglans nigra: mature tree with catkin from USA: Davis\, CA, Thomas, sample 3, jnig-catkin-3 PACBIO_SMRT 587208809 bp
SRR25617186 RNA-Seq of Juglans nigra: mature tree with catkin from USA: Davis\, CA, Thomas, sample 2, jnig-catkin-2 PACBIO_SMRT 1195738714 bp
SRR25617187 RNA-Seq of Juglans nigra: mature tree with catkin from USA: Davis\, CA, Thomas, sample 1, jnig-catkin-1 PACBIO_SMRT 2994470699 bp
SRR25617188 RNA-Seq of Juglans nigra: mature tree with bark from USA: Davis\, CA, Thomas, sample 2, jnig-bark-2 PACBIO_SMRT 1108991695 bp
SRR25617189 RNA-Seq of Juglans nigra: mature tree with bark from USA: Davis\, CA, Thomas, sample 1, jnig-bark-1 PACBIO_SMRT 2328060374 bp
SRR25617190 RNA-Seq of Juglans nigra: mature tree with fruit from USA: Davis\, CA, Thomas, sample 2, jnig-fruit-2 PACBIO_SMRT 343837236 bp
SRR25617191 RNA-Seq of Juglans nigra: mature tree with fruit from USA: Davis\, CA, Thomas, sample 1, jnig-fruit-1 PACBIO_SMRT 1487515283 bp
SRR25617192 RNA-Seq of Juglans nigra: mature tree with leaf from USA: Davis\, CA, Thomas, jnig-leaf-1 PACBIO_SMRT 719416407 bp
PRJNA273267 Juglans nigra Transcriptome or Gene expression -
50
Library Title Platform Total Base VCF File
SRR1779028 RNA-Seq of Juglans nigra: 2 years old ozone exposure 80ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-10 ILLUMINA 201727333 bp
SRR1779029 RNA-Seq of Juglans nigra: 2 years old ozone exposure 125ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-11 ILLUMINA 202256668 bp
SRR1779030 RNA-Seq of Juglans nigra: 2 years old ozone exposure 225ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-12 ILLUMINA 204246072 bp
SRR1779031 RNA-Seq of Juglans nigra: 2 years old control chamber ozone 10ppb+ mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-9 ILLUMINA 204438746 bp
SRR1779032 RNA-Seq of Juglans nigra: 2 years old ozone exposure 80ppb for 14 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH10-14D ILLUMINA 75196490 bp
SRR1779033 RNA-Seq of Juglans nigra: 2 years old ozone exposure 80ppb for 28 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH10-28D ILLUMINA 57926922 bp
SRR1779034 RNA-Seq of Juglans nigra: 2 years old ozone exposure 80ppb for 7 hours treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH10-7hr ILLUMINA 72129680 bp
SRR1779035 RNA-Seq of Juglans nigra: 2 years old ozone exposure 125ppb for 14 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH11-14D ILLUMINA 79817392 bp
SRR1779036 RNA-Seq of Juglans nigra: 2 years old ozone exposure 125ppb for 28 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH11-28D ILLUMINA 82745584 bp
SRR1779037 RNA-Seq of Juglans nigra: 2 years old ozone exposure 125ppb for 7 hours treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH11-7hr ILLUMINA 84160756 bp
SRR1779038 RNA-Seq of Juglans nigra: 2 years old ozone exposure 225ppb for 14 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH12-14D ILLUMINA 68317232 bp
SRR1779039 RNA-Seq of Juglans nigra: 2 years old ozone exposure 225ppb for 28 days treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH12-28D ILLUMINA 69096392 bp
SRR1779040 RNA-Seq of Juglans nigra: 2 years old ozone exposure 225ppb for 7 hours treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH12-7hr ILLUMINA 62691576 bp
SRR1779041 RNA-Seq of Juglans nigra: 2 years old control chamber ozone 10ppb day14 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH9-14D ILLUMINA 67950604 bp
SRR1779042 RNA-Seq of Juglans nigra: 2 years old control chamber ozone 10ppb day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH9-28D ILLUMINA 66495266 bp
SRR1779043 RNA-Seq of Juglans nigra: 2 years old control chamber ozone 10ppb 7hr treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW-CH9-7hr ILLUMINA 67233958 bp
SRR1779044 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with dormant twigs, BW D-19 ILLUMINA 217047889 bp
SRR1779045 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with undamaged leaves, BW D-20 ILLUMINA 192127827 bp
SRR1779046 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Schlesser plant with damaged leaves, BW D-21 ILLUMINA 153416149 bp
SRR1779047 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with undamaged twigs, BW D-22 ILLUMINA 211143703 bp
SRR1779048 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Schlesser plant with damaged twigs, BW D-23 ILLUMINA 186988159 bp
SRR1779049 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with green twigs/buds-this years growth, BW D-24 ILLUMINA 213298767 bp
SRR1779050 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with catkins (male flowers- very mature), BW D-28 ILLUMINA 195440232 bp
SRR1779051 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with dormant twigs, BW M-19 ILLUMINA 199435213 bp
SRR1779052 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with undamaged leaves, BW M-20 ILLUMINA 209603847 bp
SRR1779053 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Sparrow plant with damaged leaves, BW M-21 ILLUMINA 104807057 bp
SRR1779054 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with undamaged twigs, BW M-22 ILLUMINA 195626822 bp
SRR1779055 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Sparrow plant with damaged twigs, BW M-23 ILLUMINA 194450127 bp
SRR1779056 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with green twigs/buds-this years growth, BW M-24 ILLUMINA 253297039 bp
SRR1779057 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with catkins (male flowers-immature/not shed polen yet, BW M-28 ILLUMINA 207499385 bp
SRR1779058 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with female flowers, BW M-29 ILLUMINA 206947969 bp
SRR1779059 RNA-Seq of Juglans nigra: 2 years old ozone exposure 80ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-10 ILLUMINA 2330050608 bp
SRR1779060 RNA-Seq of Juglans nigra: 2 years old ozone exposure 125ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-11 ILLUMINA 1942422910 bp
SRR1779061 RNA-Seq of Juglans nigra: 2 years old ozone exposure 225ppb for 29 day + mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-12 ILLUMINA 2476087114 bp
SRR1779062 RNA-Seq of Juglans nigra: 2 years old control chamber ozone 10ppb+ mecanical wounding on day 28 treatment offspring of Sparrow and Schlesser(6 pooled seedlings) plant with leaf, BW OW-9 ILLUMINA 1973153170 bp
SRR1779063 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with dormant twigs, BW D-19 ILLUMINA 2168451214 bp
SRR1779064 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with undamaged leaves, BW D-20 ILLUMINA 2316000296 bp
SRR1779065 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Schlesser plant with damaged leaves, BW D-21 ILLUMINA 2382348004 bp
SRR1779066 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with undamaged twigs, BW D-22 ILLUMINA 2285792206 bp
SRR1779067 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Schlesser plant with damaged twigs, BW D-23 ILLUMINA 2259498876 bp
SRR1779068 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with green twigs/buds-this years growth, BW D-24 ILLUMINA 2241860842 bp
SRR1779069 RNA-Seq of Juglans nigra: adult none treatment Schlesser plant with catkins (male flowers- very mature), BW D-28 ILLUMINA 2285913204 bp
SRR1779070 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with dormant twigs, BW M-19 ILLUMINA 2063918436 bp
SRR1779071 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with undamaged leaves, BW M-20 ILLUMINA 2559093156 bp
SRR1779072 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Sparrow plant with damaged leaves, BW M-21 ILLUMINA 1433806706 bp
SRR1779073 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with undamaged twigs, BW M-22 ILLUMINA 2290783020 bp
SRR1779074 RNA-Seq of Juglans nigra: adult mechanical wounding treatment Sparrow plant with damaged twigs, BW M-23 ILLUMINA 2036282816 bp
SRR1779075 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with green twigs/buds-this years growth, BW M-24 ILLUMINA 3102046532 bp
SRR1779076 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with catkins (male flowers-immature/not shed polen yet, BW M-28 ILLUMINA 2560875806 bp
SRR1779077 RNA-Seq of Juglans nigra: adult none treatment Sparrow plant with female flowers, BW M-29 ILLUMINA 2552006188 bp
PRJNA422719 Using differential gene expression from multiple plant species to track plasticity in response to changing environments across ecosystems Marx et al., 2021
2
Library Title Platform Total Base VCF File
SRR6434976 RNA-Seq of Juglans nigra: August sample with leaf from USA: Massachusetts\, Harvard Forest, Juglans nigra 2016-038 ILLUMINA 6509962344 bp
SRR6434999 RNA-Seq of Juglans nigra: July sample with leaf from USA: Massachusetts\, Harvard Forest, Juglans nigra 2016-002 ILLUMINA 17525960575 bp
PRJNA436029 Transcriptomics profiling of black-walnut (Juglans nigra) leaf and root samples -
6
Library Title Platform Total Base VCF File
SRR6784738 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with leaf2 from USA: Martell Forest\, West Lafayette\, IN, leaf_replicate2 ILLUMINA 6433258789 bp
SRR6784739 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with leaf1 from USA: Martell Forest\, West Lafayette\, IN, leaf_replicate1 ILLUMINA 8217898411 bp
SRR6784740 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with root1 from USA: Martell Forest\, West Lafayette\, IN, Root_replicate1 ILLUMINA 7142006536 bp
SRR6784741 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with leaf3 from USA: Martell Forest\, West Lafayette\, IN, leaf_replicate3 ILLUMINA 7107641895 bp
SRR6784742 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with root3 from USA: Martell Forest\, West Lafayette\, IN, Root_replicate3 ILLUMINA 7142624762 bp
SRR6784743 RNA-Seq of Juglans nigra: 1 year random bed run seedlings plant with root2 from USA: Martell Forest\, West Lafayette\, IN, Root_replicate2 ILLUMINA 6760584419 bp

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