Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
Others

Project

Bioproject Description Publication GVCF File Library Num.
PRJEB12880 RNA-Seq was used to analyze the evolution of the transcriptome during fruit ripening of 3 varieties of C. clementina: Clemenules (control). Terol et al., 2019
9
Library Title Platform Total Base VCF File
ERR1307078 RNA-seq of Citrus clementina: 126 days post anthesis juice+pulp+peel, sport mutations derived from Fina, CL126R1 ILLUMINA 4426346856 bp
ERR1307079 RNA-seq of Citrus clementina: 126 days post anthesis juice+pulp+peel, sport mutations derived from Fina, CL126R2 ILLUMINA 5970183648 bp
ERR1307081 RNA-seq of Citrus clementina: 126 days post anthesis juice+pulp+peel, bud mutation originated from Clemenules, AR126R2 ILLUMINA 5558202240 bp
ERR1307084 RNA-seq of Citrus clementina: 154 days post anthesis juice+pulp+peel, sport mutations derived from Fina, CL154R1 ILLUMINA 4499854208 bp
ERR1307085 RNA-seq of Citrus clementina: 154 days post anthesis juice+pulp+peel, sport mutations derived from Fina, CL154R2 ILLUMINA 8156231840 bp
ERR1307090 RNA-seq of Citrus clementina: 189 days post anthesis juice+pulp+peel, sport mutations derived from Fina, CL189R1 ILLUMINA 5758338512 bp
ERR1307091 RNA-seq of Citrus clementina: 189 days post anthesis juice+pulp+peel, sport mutations derived from Fina, CL189R2 ILLUMINA 5476120112 bp
ERR1307096 RNA-seq of Citrus clementina: 240 days post anthesis juice+pulp+peel, sport mutations derived from Fina, CL240R1 ILLUMINA 5671334320 bp
ERR1307097 RNA-seq of Citrus clementina: 240 days post anthesis juice+pulp+peel, sport mutations derived from Fina, CL240R2 ILLUMINA 4906693760 bp
PRJNA421473 Genome-wide genetic variation identification and fruit-associated trait comparisons between kumquat (Fortunella japonica) and Clementine mandarin. -
3
Library Title Platform Total Base VCF File
SRR6357064 RNA-seq of Citrus clementina: 15, 30, 45, 100 and 180 days after flowering (DAF) fruit, GSM2879612 ILLUMINA 6679790700 bp
SRR6357065 RNA-seq of Citrus clementina: 15, 30, 45, 100 and 180 days after flowering (DAF) fruit, GSM2879613 ILLUMINA 6755903100 bp
SRR6357066 RNA-seq of Citrus clementina: 15, 30, 45, 100 and 180 days after flowering (DAF) fruit, GSM2879614 ILLUMINA 6745975500 bp
PRJNA894942 Evolutionary dynamics of alternative splicing in citrus revealed by Nanopore RNAseq, researchers performed ONT RNAseq in 9 citrus species, accompanied with Illumina sequencing. Hu et al., 2023
2
Library Title Platform Total Base VCF File
SRR22063102 RNA-seq of Citrus clementina: young leaves, sequencing was performed on the Illumina NovaSeq 6000 platform, Citrus clementina ILLUMINA 7071505500 bp
SRR22063103 RNA-seq of Citrus clementina: young leaves, sequencing was performed on the PromethION 24 platform, Citrus clementina ILLUMINA 5909457627 bp

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