Omics-Seq

Project

Bioproject

Description

Publication

GVCF File

Library Num.

PRJNA1048656

Citrus sinensis transcriptome or gene expression

100

Library	Title	Platform	Total Base
SRR27089974	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX2-1	ILLUMINA	16947938100 bp
SRR27089975	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK2-3	ILLUMINA	11357658300 bp
SRR27089976	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK2-2	ILLUMINA	7366905000 bp
SRR27089977	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK2-1	ILLUMINA	9481256700 bp
SRR27089978	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX1-3	ILLUMINA	19392716100 bp
SRR27089979	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX1-2	ILLUMINA	24562070100 bp
SRR27089980	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX1-1	ILLUMINA	19744437900 bp
SRR27089981	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX4-3	ILLUMINA	13594058400 bp
SRR27089982	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX4-2	ILLUMINA	12479152200 bp
SRR27089983	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX4-1	ILLUMINA	9732506100 bp
SRR27089984	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK4-3	ILLUMINA	19319424300 bp
SRR27089985	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK1-3	ILLUMINA	9819921900 bp
SRR27089986	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK4-2	ILLUMINA	20984734800 bp
SRR27089987	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK4-1	ILLUMINA	10191512700 bp
SRR27089988	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX3-3	ILLUMINA	11972151000 bp
SRR27089989	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX3-2	ILLUMINA	13773255300 bp
SRR27089990	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX3-1	ILLUMINA	11966023200 bp
SRR27089991	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK3-3	ILLUMINA	19095857700 bp
SRR27089992	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK3-2	ILLUMINA	18382478100 bp
SRR27089993	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK3-1	ILLUMINA	19018776600 bp
SRR27089994	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX2-3	ILLUMINA	17194254000 bp
SRR27089995	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Nei Xiu', NX2-2	ILLUMINA	18462082500 bp
SRR27089996	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK1-2	ILLUMINA	13102154700 bp
SRR27089997	RNA-Seq of Citrus sinensis: pulp of fruit from China:Chongqing, Citrus sinensis 'Tarocco blood orange', CK1-1	ILLUMINA	16829273400 bp

PRJNA340305

Transcriptome sequence data for Citrus sinensis

Yu et al., 2024

101

Library	Title	Platform	Total Base
SRR4084239	RNA-Seq of Citrus sinensis: mature plant with leaf from China, SWO_L_2, SWO_L_2	ILLUMINA	8157904500 bp
SRR4089854	RNA-Seq of Citrus sinensis: mature plant with seed from China, SWO_S_1, SWO_S_1	ILLUMINA	5503646250 bp
SRR4072700	RNA-Seq of Citrus sinensis: young plant with embryo from China, SWO_BE_1, SWO_BE_1	ILLUMINA	5529193500 bp
SRR4076115	RNA-Seq of Citrus sinensis: young plant with embryo from China, SWO_BE_2, SWO_BE_2	ILLUMINA	6372301000 bp
SRR4076705	RNA-Seq of Citrus sinensis: mature plant with leaf from China, SWO_L_1, SWO_L_1	ILLUMINA	8104861750 bp
SRR4096760	RNA-Seq of Citrus sinensis: mature plant with fruit from China, SWO_RF_1, SWO_RF_1	ILLUMINA	5362537500 bp
SRR4096959	RNA-Seq of Citrus sinensis: mature plant with fruit from China, SWO_RF_2, SWO_RF_2	ILLUMINA	5216541250 bp
SRR7694546	RNA-Seq of Citrus sinensis: young fruits plant with young fruits from China, SWO_YF, SWO_YF	ILLUMINA	8731166700 bp
SRR7694670	RNA-Seq of Citrus sinensis: mature plant with fruit from China, SWO_RF_2, SWO_RF_2	ILLUMINA	8697373800 bp
SRR7700837	RNA-Seq of Citrus sinensis: mature plant with seed from China, SWO_S_1, SWO_S_1	ILLUMINA	12230980800 bp
SRR7693918	RNA-Seq of Citrus sinensis: young plant with embryo from China, SWO_BE_2, SWO_BE_2	ILLUMINA	10447187100 bp
SRR7694022	RNA-Seq of Citrus sinensis: mature plant with leaf from China, SWO_L_2, SWO_L_2	ILLUMINA	9541013700 bp
SRR7694066	RNA-Seq of Citrus sinensis: mature plant with leaf from China, SWO_L_2, SWO_L_2	ILLUMINA	9712386900 bp
SRR4294693	RNA-Seq of Citrus sinensis: mature plant with seed from China, SWO_S_1, SWO_S_1	ILLUMINA	5346373000 bp
SRR6350009	RNA-Seq of Citrus sinensis: late-stage ovules plant with late-stage ovules from China, SWO_AE, SWO_AE	ILLUMINA	5638958250 bp
SRR6350019	RNA-Seq of Citrus sinensis: late-stage ovules plant with late-stage ovules from China, SWO_AE, SWO_AE	ILLUMINA	6657597250 bp
SRR6350020	RNA-Seq of Citrus sinensis: young fruits from China, SWO_YF, SWO_YF	ILLUMINA	6022826750 bp
SRR6350032	RNA-Seq of Citrus sinensis: young fruits from China, SWO_YF, SWO_YF	ILLUMINA	5636745000 bp

PRJNA417324

Transcriptome sequenceing of Citrus sinensis

Wu et al., 2023

102

Library	Title	Platform	Total Base
SRR6517661	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 26 treatment from USA:Davis, Parent Washington Navel, Week 26 HLB+ N6	ILLUMINA	6948890400 bp
SRR6517662	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 26 treatment from USA:Davis, Parent Washington Navel, Week 26 HLB+ N4	ILLUMINA	6353197200 bp
SRR6517663	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 26 treatment from USA:Davis, Parent Washington Navel, Week 26 HLB+ N2	ILLUMINA	7342208000 bp
SRR6517664	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 26 treatment from USA:Davis, Parent Washington Navel, Week 26 HLB+ N1	ILLUMINA	7758000600 bp
SRR6517665	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 46 treatment from USA:Davis, Parent Washington Navel, Week 46 HLB- N6	ILLUMINA	7420733200 bp
SRR6517666	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 46 treatment from USA:Davis, Parent Washington Navel, Week 46 HLB- N5	ILLUMINA	7348660200 bp
SRR6517667	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 46 treatment from USA:Davis, Parent Washington Navel, Week 46 HLB- N2	ILLUMINA	8610145200 bp
SRR6517668	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 46 treatment from USA:Davis, Parent Washington Navel, Week 46 HLB- N1	ILLUMINA	7108934000 bp
SRR6517669	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 46 treatment from USA:Davis, Parent Washington Navel, Week 46 HLB+ N2	ILLUMINA	8613512200 bp
SRR6517670	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 46 treatment from USA:Davis, Parent Washington Navel, Week 46 HLB+ N1	ILLUMINA	7600248600 bp
SRR6517672	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week1 26 treatment from USA:Davis, Parent Washington Navel, Week 26 HLB- N6	ILLUMINA	7061807200 bp
SRR6517673	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 18 treatment from USA:Davis, Parent Washington Navel, Week 18 HLB+ N1	ILLUMINA	7772415200 bp
SRR6517675	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week1 18 treatment from USA:Davis, Parent Washington Navel, Week 18 HLB- N5	ILLUMINA	7134628000 bp
SRR6517676	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 18 treatment from USA:Davis, Parent Washington Navel, Week 18 HLB- N6	ILLUMINA	6581787000 bp
SRR6517677	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 26 treatment from USA:Davis, Parent Washington Navel, Week 26 HLB- N1	ILLUMINA	7893783600 bp
SRR6517678	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 26 treatment from USA:Davis, Parent Washington Navel, Week 26 HLB- N2	ILLUMINA	8352558800 bp
SRR6517679	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 18 treatment from USA:Davis, Parent Washington Navel, Week 18 HLB+ N4	ILLUMINA	7277282200 bp
SRR6517680	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 18 treatment from USA:Davis, Parent Washington Navel, Week 18 HLB+ N6	ILLUMINA	7092431000 bp
SRR6517681	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 18 treatment from USA:Davis, Parent Washington Navel, Week 18 HLB- N1	ILLUMINA	7387869800 bp
SRR6517682	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 18 treatment from USA:Davis, Parent Washington Navel, Week 18 HLB- N2	ILLUMINA	8164759600 bp
SRR6517683	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 8 treatment from USA:Davis, Parent Washington Navel, Week 8 HLB- N5	ILLUMINA	8341854200 bp
SRR6517688	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 8 treatment from USA:Davis, Parent Washington Navel, Week 8 HLB+ N6	ILLUMINA	8108414200 bp
SRR6517690	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 8 treatment from USA:Davis, Parent Washington Navel, Week 8 HLB+ N2	ILLUMINA	6916310600 bp
SRR6517671	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week1 26 treatment from USA:Davis, Parent Washington Navel, Week 26 HLB- N5	ILLUMINA	7089260600 bp
SRR6517674	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 18 treatment from USA:Davis, Parent Washington Navel, Week 18 HLB+ N2	ILLUMINA	8312949200 bp
SRR6517684	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 8 treatment from USA:Davis, Parent Washington Navel, Week 8 HLB- N6	ILLUMINA	7647659800 bp
SRR6517685	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 8 treatment from USA:Davis, Parent Washington Navel, Week 8 HLB- N1	ILLUMINA	7813173400 bp
SRR6517686	RNA-Seq of Citrus sinensis: young plant with leafwith Control Week 8 treatment from USA:Davis, Parent Washington Navel, Week 8 HLB- N2	ILLUMINA	7154279800 bp
SRR6517687	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 8 treatment from USA:Davis, Parent Washington Navel, Week 8 HLB+ N4	ILLUMINA	6467393200 bp
SRR6517689	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 8 treatment from USA:Davis, Parent Washington Navel, Week 8 HLB+ N1	ILLUMINA	8553990200 bp
SRR6517691	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 46 treatment from USA:Davis, Parent Washington Navel, Week 46 HLB+ N4	ILLUMINA	7034371000 bp
SRR6517692	RNA-Seq of Citrus sinensis: young plant with leafwith HLB Week 46 treatment from USA:Davis, Parent Washington Navel, Week 46 HLB+ N6	ILLUMINA	7716922800 bp

PRJNA428949

Transcriptomic response of Citrus sinensis in responce to pomegranate peel extract

Belgacem et al., 2019

103

Library	Title	Platform	Total Base
SRR6451211	RNA-Seq of Citrus sinensis: fleshwith Pomegranate Peel Extract treatment from Italy: Reggio Calabria, Valencia, Pomegranate Peel Extract _24h_1	ILLUMINA	2661558262 bp
SRR6451212	RNA-Seq of Citrus sinensis: fleshwith Pomegranate Peel Extract treatment from Italy: Reggio Calabria, Valencia, Pomegranate Peel Extract _24h_2	ILLUMINA	1930334422 bp
SRR6451213	RNA-Seq of Citrus sinensis: fleshwith Pomegranate Peel Extract treatment from Italy: Reggio Calabria, Valencia, Pomegranate Peel Extract _24h_3	ILLUMINA	1855881464 bp
SRR6451214	RNA-Seq of Citrus sinensis: fleshwith Pomegranate Peel Extract treatment from Italy: Reggio Calabria, Valencia, Pomegranate Peel Extract _6h_1	ILLUMINA	2342413008 bp
SRR6451215	RNA-Seq of Citrus sinensis: fleshwith Pomegranate Peel Extract treatment from Italy: Reggio Calabria, Valencia, Pomegranate Peel Extract _6h_2	ILLUMINA	2908738390 bp
SRR6451216	RNA-Seq of Citrus sinensis: fleshwith Pomegranate Peel Extract treatment from Italy: Reggio Calabria, Valencia, Pomegranate Peel Extract _6h_3	ILLUMINA	2151385648 bp
SRR6451217	RNA-Seq of Citrus sinensis: fleshwith Pomegranate Peel Extract treatment from Italy: Reggio Calabria, Valencia, Pomegranate Peel Extract _0h_3	ILLUMINA	2550091834 bp
SRR6451218	RNA-Seq of Citrus sinensis: fleshwith Citric Acid treatment from Italy: Reggio Calabria, Valencia, Citric Acid_0h_1	ILLUMINA	3334928090 bp
SRR6451219	RNA-Seq of Citrus sinensis: fleshwith H2O treatment from Italy: Reggio Calabria, Valencia, H2O_24h_3	ILLUMINA	4088305674 bp
SRR6451220	RNA-Seq of Citrus sinensis: fleshwith H2O treatment from Italy: Reggio Calabria, Valencia, H2O_6h_1	ILLUMINA	4545399960 bp
SRR6451221	RNA-Seq of Citrus sinensis: fleshwith H2O treatment from Italy: Reggio Calabria, Valencia, H2O_0h_3	ILLUMINA	1971789064 bp
SRR6451222	RNA-Seq of Citrus sinensis: fleshwith H2O treatment from Italy: Reggio Calabria, Valencia, H2O_0h_1	ILLUMINA	2774239316 bp
SRR6451223	RNA-Seq of Citrus sinensis: fleshwith H2O treatment from Italy: Reggio Calabria, Valencia, H2O_24h_2	ILLUMINA	3728019484 bp
SRR6451224	RNA-Seq of Citrus sinensis: fleshwith H2O treatment from Italy: Reggio Calabria, Valencia, H2O_24h_1	ILLUMINA	3134495004 bp
SRR6451225	RNA-Seq of Citrus sinensis: fleshwith H2O treatment from Italy: Reggio Calabria, Valencia, H2O_0h_2	ILLUMINA	3413471548 bp
SRR6451226	RNA-Seq of Citrus sinensis: fleshwith H2O treatment from Italy: Reggio Calabria, Valencia, H2O_6h_3	ILLUMINA	4232862934 bp
SRR6451227	RNA-Seq of Citrus sinensis: fleshwith H2O treatment from Italy: Reggio Calabria, Valencia, H2O_6h_2	ILLUMINA	4186739264 bp
SRR6451228	RNA-Seq of Citrus sinensis: fleshwith Pomegranate Peel Extract treatment from Italy: Reggio Calabria, Valencia, Pomegranate Peel Extract _0h_2	ILLUMINA	1707153712 bp
SRR6451229	RNA-Seq of Citrus sinensis: fleshwith Pomegranate Peel Extract treatment from Italy: Reggio Calabria, Valencia, Pomegranate Peel Extract _0h_1	ILLUMINA	1921945564 bp
SRR6451230	RNA-Seq of Citrus sinensis: fleshwith Citric Acid treatment from Italy: Reggio Calabria, Valencia, Citric Acid_0h_2	ILLUMINA	2185531930 bp
SRR6451231	RNA-Seq of Citrus sinensis: fleshwith Citric Acid treatment from Italy: Reggio Calabria, Valencia, Citric Acid_6h_2	ILLUMINA	2874121246 bp
SRR6451232	RNA-Seq of Citrus sinensis: fleshwith Citric Acid treatment from Italy: Reggio Calabria, Valencia, Citric Acid_6h_1	ILLUMINA	2227637618 bp
SRR6451233	RNA-Seq of Citrus sinensis: fleshwith Citric Acid treatment from Italy: Reggio Calabria, Valencia, Citric Acid_0h_3	ILLUMINA	2584152064 bp
SRR6451234	RNA-Seq of Citrus sinensis: fleshwith Citric Acid treatment from Italy: Reggio Calabria, Valencia, Citric Acid_24h_1	ILLUMINA	3141178376 bp
SRR6451235	RNA-Seq of Citrus sinensis: fleshwith Citric Acid treatment from Italy: Reggio Calabria, Valencia, Citric Acid_6h_3	ILLUMINA	1761406872 bp
SRR6451236	RNA-Seq of Citrus sinensis: fleshwith Citric Acid treatment from Italy: Reggio Calabria, Valencia, Citric Acid_24h_3	ILLUMINA	2280058234 bp
SRR6451237	RNA-Seq of Citrus sinensis: fleshwith Citric Acid treatment from Italy: Reggio Calabria, Valencia, Citric Acid_24h_2	ILLUMINA	5022354886 bp

PRJNA573296

Transcriptome sequenceing of Citrus sinensis

Zhu et al., 2021

104

Library	Title	Platform	Total Base
SRR10187287	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 MT	ILLUMINA	7644095700 bp
SRR10188380	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 MT	ILLUMINA	7627490400 bp
SRR10188484	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 MT	ILLUMINA	7310710200 bp
SRR10188486	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 MT	ILLUMINA	6529403100 bp
SRR10188519	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 250 MT	ILLUMINA	6094949400 bp
SRR10189114	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 250 MT	ILLUMINA	7725392400 bp
SRR10189598	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 250 MT	ILLUMINA	7038123900 bp
SRR10176579	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 WT	ILLUMINA	6622831500 bp
SRR10177002	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 250 WT	ILLUMINA	7676068200 bp
SRR10177054	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 250 WT	ILLUMINA	8277808200 bp
SRR10177055	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 250 WT	ILLUMINA	7155545700 bp
SRR10177191	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 280 WT	ILLUMINA	8732288100 bp
SRR10177256	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 280 WT	ILLUMINA	7604021700 bp
SRR10177318	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 280 WT	ILLUMINA	8175200100 bp
SRR10177392	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 MT	ILLUMINA	7178670000 bp
SRR10177394	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 MT	ILLUMINA	5880029400 bp
SRR10313336	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 SCO	ILLUMINA	5461884900 bp
SRR10313337	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 SCB	ILLUMINA	5896035900 bp
SRR10314041	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 SCB	ILLUMINA	4643499600 bp
SRR10313090	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 SCO	ILLUMINA	6205458600 bp
SRR10313347	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 SCB	ILLUMINA	5908926000 bp
SRR10193327	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 280 MT	ILLUMINA	5865672900 bp
SRR10193404	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 280 MT	ILLUMINA	6777824100 bp
SRR10193441	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 280 MT	ILLUMINA	7377862800 bp
SRR10199028	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 SCO	ILLUMINA	5902801200 bp
SRR10199291	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 SCO	ILLUMINA	6155122200 bp
SRR10199292	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 SCO	ILLUMINA	5262788400 bp
SRR10199347	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 SCB	ILLUMINA	6247357500 bp
SRR10199448	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 SCB	ILLUMINA	6860875500 bp
SRR10199492	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 SCB	ILLUMINA	6509286000 bp
SRR10199551	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 SCO	ILLUMINA	5728313700 bp
SRR10305580	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 SCO	ILLUMINA	5761570200 bp
SRR10168372	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 WT	ILLUMINA	6778210800 bp
SRR10168408	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 WT	ILLUMINA	7856441400 bp
SRR10168409	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 WT	ILLUMINA	6595956300 bp
SRR10168410	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 MT	ILLUMINA	7446887100 bp
SRR10168441	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 MT	ILLUMINA	6802986900 bp
SRR10168629	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 190 MT	ILLUMINA	6378549300 bp
SRR10168688	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 WT	ILLUMINA	6458841300 bp
SRR10168713	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 WT	ILLUMINA	7627235400 bp
SRR10168720	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 WT	ILLUMINA	6878369100 bp
SRR10168841	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 WT	ILLUMINA	7196521200 bp
SRR10172196	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 230 WT	ILLUMINA	6739725300 bp
SRR10200360	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 SCO	ILLUMINA	6477321300 bp
SRR10200373	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 SCO	ILLUMINA	5864703300 bp
SRR10201525	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 SCB	ILLUMINA	4498800000 bp
SRR10201912	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 SCB	ILLUMINA	5315232900 bp
SRR10201942	RNA-Seq of Citrus sinensis: fruit from China: hubei, Citrus sinensis L. Osbeck, 210 SCB	ILLUMINA	6027797100 bp

PRJNA599503

RNA sequenceing of citrus tissues at the early stage

105

Library	Title	Platform	Total Base
SRR10848789	RNA-Seq of Citrus sinensis: 2 years plant with young leaf1 from China:Jiangxi Province\, Chongyi, HLB_L1	ILLUMINA	8142907200 bp
SRR10848797	RNA-Seq of Citrus sinensis: 2 years plant with root3 from China:Jiangxi Province\, Chongyi, HLB_R3	ILLUMINA	8373164100 bp
SRR10848798	RNA-Seq of Citrus sinensis: 2 years plant with root2 from China:Jiangxi Province\, Chongyi, HLB_R2	ILLUMINA	7599992100 bp
SRR10848799	RNA-Seq of Citrus sinensis: 2 years plant with root1 from China:Jiangxi Province\, Chongyi, HLB_R1	ILLUMINA	8949842100 bp
SRR10848803	RNA-Seq of Citrus sinensis: 2 years plant with young leaf3 from China:Jiangxi Province\, Chongyi, HLB_L3	ILLUMINA	6972667800 bp
SRR10848804	RNA-Seq of Citrus sinensis: 2 years plant with young leaf2 from China:Jiangxi Province\, Chongyi, HLB_L2	ILLUMINA	8395342800 bp
SRR10848790	RNA-Seq of Citrus sinensis: 2 years plant with root3 from China:Jiangxi Province\, Chongyi, CY_R3	ILLUMINA	8534051400 bp
SRR10848791	RNA-Seq of Citrus sinensis: 2 years plant with root2 from China:Jiangxi Province\, Chongyi, CY_R2	ILLUMINA	8636550900 bp
SRR10848792	RNA-Seq of Citrus sinensis: 2 years plant with root1 from China:Jiangxi Province\, Chongyi, CY_R1	ILLUMINA	7699107000 bp
SRR10848793	RNA-Seq of Citrus sinensis: 2 years plant with bark3 from China:Jiangxi Province\, Chongyi, CY_B3	ILLUMINA	7949935500 bp
SRR10848794	RNA-Seq of Citrus sinensis: 2 years plant with bark2 from China:Jiangxi Province\, Chongyi, CY_B2	ILLUMINA	9056333100 bp
SRR10848795	RNA-Seq of Citrus sinensis: 2 years plant with bark1 from China:Jiangxi Province\, Chongyi, CY_B1	ILLUMINA	7444500600 bp
SRR10848796	RNA-Seq of Citrus sinensis: 2 years plant with young leaf3 from China:Jiangxi Province\, Chongyi, CY_L3	ILLUMINA	9488957700 bp
SRR10848800	RNA-Seq of Citrus sinensis: 2 years plant with bark3 from China:Jiangxi Province\, Chongyi, HLB_B3	ILLUMINA	8282917200 bp
SRR10848801	RNA-Seq of Citrus sinensis: 2 years plant with bark2 from China:Jiangxi Province\, Chongyi, HLB_B2	ILLUMINA	7990363500 bp
SRR10848802	RNA-Seq of Citrus sinensis: 2 years plant with bark1 from China:Jiangxi Province\, Chongyi, HLB_B1	ILLUMINA	8277015600 bp
SRR10848805	RNA-Seq of Citrus sinensis: 2 years plant with young leaf2 from China:Jiangxi Province\, Chongyi, CY_L2	ILLUMINA	8931006900 bp
SRR10848806	RNA-Seq of Citrus sinensis: 2 years plant with young leaf1 from China:Jiangxi Province\, Chongyi, CY_L1	ILLUMINA	9305488800 bp

PRJNA636131

RNA-Seq rawdata for citrus fruit at four development stages

Zhang et al., 2021

106

Library	Title	Platform	Total Base
SRR11886713	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO150-1	ILLUMINA	7940262300 bp
SRR11886714	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO120-3	ILLUMINA	6697387258 bp
SRR11886715	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO120-2	ILLUMINA	5955448758 bp
SRR11886716	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO120-1	ILLUMINA	7937161886 bp
SRR11886717	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO90-3	ILLUMINA	8670414564 bp
SRR11886718	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO90-2	ILLUMINA	9249758076 bp
SRR11886719	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO90-1	ILLUMINA	9069570078 bp
SRR11886720	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO60-3	ILLUMINA	5649595540 bp
SRR11886721	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO150-3	ILLUMINA	5793192000 bp
SRR11886722	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO150-2	ILLUMINA	7883767800 bp
SRR11886723	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO60-2	ILLUMINA	6460750326 bp
SRR11886724	RNA-Seq of Citrus sinensis: 15 years plant with juice sacs from China:Wuhan, Cara cara navel orange, CNO60-1	ILLUMINA	6337789214 bp

PRJNA642106

Transcriptome defense response of Citrus sinensis

107

Library	Title	Platform	Total Base
SRR12096787	RNA-Seq of Citrus sinensis: 3 days after innoculation plant with albedo,excised albedo, GSM4640689	ILLUMINA	7231789200 bp
SRR12096783	RNA-Seq of Citrus sinensis: 3 days after innoculation plant with albedo,excised albedo, GSM4640685	ILLUMINA	7151385300 bp
SRR12096784	RNA-Seq of Citrus sinensis: 3 days after innoculation plant with albedo,excised albedo, GSM4640686	ILLUMINA	7036044600 bp
SRR12096785	RNA-Seq of Citrus sinensis: 3 days after innoculation plant with albedo,excised albedo, GSM4640687	ILLUMINA	6726521400 bp
SRR12096786	RNA-Seq of Citrus sinensis: 3 days after innoculation plant with albedo,excised albedo, GSM4640688	ILLUMINA	5928805800 bp
SRR12096788	RNA-Seq of Citrus sinensis: 3 days after innoculation plant with albedo,excised albedo, GSM4640690	ILLUMINA	6357126900 bp

PRJNA670516

Raw sequence reads of RNA-seq of Citrus sinensis

Wu et al., 2023

108

Library	Title	Platform	Total Base
SRR12917909	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_O15	ILLUMINA	9229878300 bp
SRR12917910	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_D3	ILLUMINA	8464113300 bp
SRR12917911	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_D3	ILLUMINA	8481183000 bp
SRR12917912	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_O2	ILLUMINA	7910743200 bp
SRR12917913	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_O2	ILLUMINA	7876168500 bp
SRR12917914	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_D3	ILLUMINA	9394302000 bp
SRR12917915	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_D4	ILLUMINA	8063047800 bp
SRR12917916	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_D4	ILLUMINA	9841123200 bp
SRR12917917	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_D4	ILLUMINA	7526070900 bp
SRR12917918	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_WT	ILLUMINA	8424450900 bp
SRR12917919	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_WT	ILLUMINA	7102813200 bp
SRR12917920	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_WT	ILLUMINA	7412020800 bp
SRR12917921	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_O2	ILLUMINA	8090980500 bp
SRR12917926	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_O15	ILLUMINA	7865640600 bp
SRR12917927	RNA-Seq of Citrus sinensis: leaf from China, Wanjincheng orange, RNA-seq_O15	ILLUMINA	9526223100 bp

PRJNA674975

Transcriptome of Citrus sinensis fruit along ripening

Romero et al., 2020

109

Library	Title	Platform	Total Base
SRR13009807	RNA-Seq of Citrus sinensis: breaker plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PB2	ILLUMINA	1164065382 bp
SRR13009808	RNA-Seq of Citrus sinensis: mature green plant with flavedo from Spain: Valencia\, Moncada, Navelate, NM2	ILLUMINA	1417933876 bp
SRR13009809	RNA-Seq of Citrus sinensis: mature green plant with flavedo from Spain: Valencia\, Moncada, Navelate, NM1	ILLUMINA	1444162340 bp
SRR13009810	RNA-Seq of Citrus sinensis: breaker plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PB1	ILLUMINA	1289727510 bp
SRR13009811	RNA-Seq of Citrus sinensis: breaker plant with flavedo from Spain: Valencia\, Moncada, Navelate, NB3	ILLUMINA	1527469243 bp
SRR13009812	RNA-Seq of Citrus sinensis: breaker plant with flavedo from Spain: Valencia\, Moncada, Navelate, NB2	ILLUMINA	1269115413 bp
SRR13009813	RNA-Seq of Citrus sinensis: breaker plant with flavedo from Spain: Valencia\, Moncada, Navelate, NB1	ILLUMINA	1201045913 bp
SRR13009814	RNA-Seq of Citrus sinensis: mature green plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PM3	ILLUMINA	1685748671 bp
SRR13009815	RNA-Seq of Citrus sinensis: mature green plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PM2	ILLUMINA	1390539382 bp
SRR13009816	RNA-Seq of Citrus sinensis: mature green plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PM1	ILLUMINA	1226322754 bp
SRR13009817	RNA-Seq of Citrus sinensis: full colored plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PFC3	ILLUMINA	1522812459 bp
SRR13009818	RNA-Seq of Citrus sinensis: full colored plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PFC2	ILLUMINA	2345115503 bp
SRR13009819	RNA-Seq of Citrus sinensis: full colored plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PFC1	ILLUMINA	1282997975 bp
SRR13009820	RNA-Seq of Citrus sinensis: full colored plant with flavedo from Spain: Valencia\, Moncada, Navelate, NFC3	ILLUMINA	1386138630 bp
SRR13009821	RNA-Seq of Citrus sinensis: mature green plant with flavedo from Spain: Valencia\, Moncada, Navelate, NM3	ILLUMINA	1829281717 bp
SRR13009822	RNA-Seq of Citrus sinensis: full colored plant with flavedo from Spain: Valencia\, Moncada, Navelate, NFC2	ILLUMINA	1409134083 bp
SRR13009823	RNA-Seq of Citrus sinensis: full colored plant with flavedo from Spain: Valencia\, Moncada, Navelate, NFC1	ILLUMINA	1468269483 bp
SRR13009824	RNA-Seq of Citrus sinensis: colored plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PC3	ILLUMINA	1226131703 bp
SRR13009825	RNA-Seq of Citrus sinensis: colored plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PC2	ILLUMINA	1084825087 bp
SRR13009826	RNA-Seq of Citrus sinensis: colored plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PC1	ILLUMINA	1322465399 bp
SRR13009827	RNA-Seq of Citrus sinensis: colored plant with flavedo from Spain: Valencia\, Moncada, Navelate, NC3	ILLUMINA	1384700248 bp
SRR13009828	RNA-Seq of Citrus sinensis: colored plant with flavedo from Spain: Valencia\, Moncada, Navelate, NC2	ILLUMINA	1316507231 bp
SRR13009829	RNA-Seq of Citrus sinensis: colored plant with flavedo from Spain: Valencia\, Moncada, Navelate, NC1	ILLUMINA	1868763371 bp
SRR13009830	RNA-Seq of Citrus sinensis: breaker plant with flavedo from Spain: Valencia\, Moncada, Pinalate, PB3	ILLUMINA	999408900 bp

PRJNA703546

Gene expression profiles of Citrus sinensis

110

Library	Title	Platform	Total Base
SRR13757880	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098371	ILLUMINA	15204188490 bp
SRR13757881	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098372	ILLUMINA	9703469588 bp
SRR13757882	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098373	ILLUMINA	11029204590 bp
SRR13757883	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098374	ILLUMINA	12158806598 bp
SRR13757884	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098375	ILLUMINA	10606811384 bp
SRR13757885	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098376	ILLUMINA	10360982176 bp
SRR13757886	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098377	ILLUMINA	11164316974 bp
SRR13757887	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098378	ILLUMINA	10814833212 bp
SRR13757888	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098379	ILLUMINA	9595524218 bp
SRR13757889	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098380	ILLUMINA	10104808562 bp
SRR13757890	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098381	ILLUMINA	9618668290 bp
SRR13757891	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098382	ILLUMINA	9688947918 bp
SRR13757892	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098383	ILLUMINA	9775853552 bp
SRR13757893	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098384	ILLUMINA	9179899134 bp
SRR13757894	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098385	ILLUMINA	10505127380 bp
SRR13757895	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098386	ILLUMINA	11488513672 bp
SRR13757896	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098387	ILLUMINA	9714890624 bp
SRR13757897	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098388	ILLUMINA	11055824984 bp
SRR13757898	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098389	ILLUMINA	11770170046 bp
SRR13757899	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098390	ILLUMINA	10498656728 bp
SRR13757900	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098391	ILLUMINA	12082536498 bp
SRR13757901	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098392	ILLUMINA	9093411468 bp
SRR13757902	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098393	ILLUMINA	11183942444 bp
SRR13757903	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098394	ILLUMINA	9702766230 bp
SRR13757904	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098395	ILLUMINA	10870680260 bp
SRR13757905	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098396	ILLUMINA	10555211664 bp
SRR13757906	RNA-Seq of Citrus sinensis: leaf with Clas+T30 treatment, , GSM5098397	ILLUMINA	12395214916 bp
SRR13757907	RNA-Seq of Citrus sinensis: leaf with Clas+T30 treatment, , GSM5098398	ILLUMINA	8839989678 bp
SRR13757908	RNA-Seq of Citrus sinensis: leaf with Clas+T30 treatment, , GSM5098399	ILLUMINA	10113462070 bp
SRR13757909	RNA-Seq of Citrus sinensis: leaf with Clas+T30 treatment, , GSM5098400	ILLUMINA	10087379236 bp
SRR13757910	RNA-Seq of Citrus sinensis: leaf with Clas+CCTEA107 treatment, , GSM5098401	ILLUMINA	10245284466 bp
SRR13757911	RNA-Seq of Citrus sinensis: leaf with Clas+CCTEA107 treatment, , GSM5098402	ILLUMINA	10886576634 bp
SRR13757912	RNA-Seq of Citrus sinensis: leaf with Clas+CCTEA107 treatment, , GSM5098403	ILLUMINA	8911052392 bp
SRR13757913	RNA-Seq of Citrus sinensis: leaf with Clas+CCTEA107 treatment, , GSM5098404	ILLUMINA	9624390586 bp
SRR13757914	RNA-Seq of Citrus sinensis: leaf with Clas+CCTEA107 treatment, , GSM5098405	ILLUMINA	12040294248 bp
SRR13757915	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098406	ILLUMINA	10277487330 bp
SRR13757916	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098407	ILLUMINA	11868808682 bp
SRR13757917	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098408	ILLUMINA	11954444708 bp
SRR13757918	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098409	ILLUMINA	12207344038 bp
SRR13757919	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098410	ILLUMINA	10441452492 bp
SRR13757920	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098411	ILLUMINA	13103597290 bp
SRR13757921	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098412	ILLUMINA	10512532722 bp
SRR13757922	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098413	ILLUMINA	9905428162 bp
SRR13757923	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098414	ILLUMINA	10369266036 bp
SRR13757924	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098415	ILLUMINA	9622991722 bp
SRR13757925	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098416	ILLUMINA	10411774650 bp
SRR13757926	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098417	ILLUMINA	10859221776 bp
SRR13757927	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098418	ILLUMINA	11312509884 bp
SRR13757928	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098419	ILLUMINA	11185795818 bp
SRR13757929	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098420	ILLUMINA	11553123250 bp
SRR13757930	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098421	ILLUMINA	12276166214 bp
SRR13757931	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098422	ILLUMINA	10881053356 bp
SRR13757932	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098423	ILLUMINA	10419604604 bp
SRR13757933	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098424	ILLUMINA	10783329478 bp
SRR13757934	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098425	ILLUMINA	9712741290 bp
SRR13757935	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098426	ILLUMINA	8256975960 bp
SRR13757936	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098427	ILLUMINA	9459828370 bp
SRR13757937	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098428	ILLUMINA	9300570180 bp
SRR13757938	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098429	ILLUMINA	11138809450 bp
SRR13757939	RNA-Seq of Citrus sinensis: leaf with Clas+T30 treatment, , GSM5098430	ILLUMINA	10512367528 bp
SRR13757940	RNA-Seq of Citrus sinensis: leaf with Clas+T30 treatment, , GSM5098431	ILLUMINA	9306061144 bp
SRR13757941	RNA-Seq of Citrus sinensis: leaf with Clas+T30 treatment, , GSM5098432	ILLUMINA	13039781066 bp
SRR13757942	RNA-Seq of Citrus sinensis: leaf with Clas+T30 treatment, , GSM5098433	ILLUMINA	12245591734 bp
SRR13757943	RNA-Seq of Citrus sinensis: leaf with Clas+CCTEA107 treatment, , GSM5098434	ILLUMINA	10125539654 bp
SRR13757944	RNA-Seq of Citrus sinensis: leaf with Clas+CCTEA107 treatment, , GSM5098435	ILLUMINA	13035104898 bp
SRR13757945	RNA-Seq of Citrus sinensis: leaf with Clas+CCTEA107 treatment, , GSM5098436	ILLUMINA	11572204818 bp
SRR13757946	RNA-Seq of Citrus sinensis: leaf with Clas+CCTEA107 treatment, , GSM5098437	ILLUMINA	10704771124 bp
SRR13757947	RNA-Seq of Citrus sinensis: leaf with Clas+CCTEA107 treatment, , GSM5098438	ILLUMINA	10062144116 bp
SRR13757948	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098439	ILLUMINA	10370308540 bp
SRR13757949	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098440	ILLUMINA	13068398586 bp
SRR13757950	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098441	ILLUMINA	13350961262 bp
SRR13757951	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098442	ILLUMINA	12242894874 bp
SRR13757952	RNA-Seq of Citrus sinensis: leaf with Control treatment, , GSM5098443	ILLUMINA	10002464990 bp
SRR13757953	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098444	ILLUMINA	9325587860 bp
SRR13757954	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098445	ILLUMINA	10958879964 bp
SRR13757955	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098446	ILLUMINA	8488654656 bp
SRR13757956	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098447	ILLUMINA	9855699332 bp
SRR13757957	RNA-Seq of Citrus sinensis: leaf with S. citri treatment, , GSM5098448	ILLUMINA	12065509738 bp
SRR13757958	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098449	ILLUMINA	8775303694 bp
SRR13757959	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098450	ILLUMINA	11376691528 bp
SRR13757960	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098451	ILLUMINA	11726056906 bp
SRR13757961	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098452	ILLUMINA	9818886438 bp
SRR13757962	RNA-Seq of Citrus sinensis: leaf with Mild CTV (T30 isolate) treatment, , GSM5098453	ILLUMINA	10616887312 bp
SRR13757963	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098454	ILLUMINA	10942925304 bp
SRR13757964	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098455	ILLUMINA	10725707576 bp
SRR13757965	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098456	ILLUMINA	10321287598 bp
SRR13757966	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098457	ILLUMINA	10429678418 bp
SRR13757967	RNA-Seq of Citrus sinensis: leaf with Stem-pitting CTV (CCTEA-107) treatment, , GSM5098458	ILLUMINA	9706014240 bp
SRR13757968	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098459	ILLUMINA	9849030568 bp
SRR13757969	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098460	ILLUMINA	11271910514 bp
SRR13757970	RNA-Seq of Citrus sinensis: leaf with Clas treatment, , GSM5098461	ILLUMINA	10078914780 bp

PRJNA778304

RNA-sequencing of citrus callus

Feng et al., 2022

111

Library	Title	Platform	Total Base
SRR16874240	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, MIM-0-BR1	ILLUMINA	7355366700 bp
SRR16874241	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, EV-30-BR3	ILLUMINA	9089725500 bp
SRR16874242	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, EV-30-BR2	ILLUMINA	9285998100 bp
SRR16874243	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, EV-30-BR1	ILLUMINA	7584892500 bp
SRR16874244	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, EV-15-BR3	ILLUMINA	8238405900 bp
SRR16874245	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, EV-15-BR2	ILLUMINA	8031851400 bp
SRR16874246	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, EV-15-BR1	ILLUMINA	8637827400 bp
SRR16874247	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, EV-0-BR3	ILLUMINA	7098096900 bp
SRR16874248	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, MIM-30-BR3	ILLUMINA	9983022900 bp
SRR16874249	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, MIM-30-BR2	ILLUMINA	8418039900 bp
SRR16874250	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, MIM-30-BR1	ILLUMINA	8183871600 bp
SRR16874251	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, MIM-15-BR3	ILLUMINA	8130246000 bp
SRR16874252	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, MIM-15-BR2	ILLUMINA	7584498300 bp
SRR16874253	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, MIM-15-BR1	ILLUMINA	6809375400 bp
SRR16874254	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, MIM-0-BR3	ILLUMINA	6384131100 bp
SRR16874255	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, MIM-0-BR2	ILLUMINA	8501063700 bp
SRR16874256	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, EV-0-BR2	ILLUMINA	7191616200 bp
SRR16874257	RNA-Seq of Citrus sinensis: callus from USA: Lake Alfred\, FL, Valencia sweet orange, EV-0-BR1	ILLUMINA	7972362600 bp

PRJNA792482

Transcriptome analysis of Citrus sinensis under drought

Zia et al., 2022

112

Library	Title	Platform	Total Base
SRR17400783	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Newhall navel orange, NHE_10-3	ILLUMINA	8051501502 bp
SRR17400784	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Newhall navel orange, NHE_10-2	ILLUMINA	8784910616 bp
SRR17400785	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Gannanzao navel orange, GNZ_0-2	ILLUMINA	7633436560 bp
SRR17400786	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Gannanzao navel orange, GNZ_0-1	ILLUMINA	7755263058 bp
SRR17400787	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Newhall navel orange, NHE_10-1	ILLUMINA	7643474436 bp
SRR17400788	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Gannanzao navel orange, GNZ_10-3	ILLUMINA	6867441042 bp
SRR17400789	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Gannanzao navel orange, GNZ_10-2	ILLUMINA	7038276100 bp
SRR17400790	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Gannanzao navel orange, GNZ_10-1	ILLUMINA	7868823212 bp
SRR17400791	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Newhall navel orange, NHE_0-3	ILLUMINA	6371191924 bp
SRR17400792	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Newhall navel orange, NHE_0-2	ILLUMINA	7187581880 bp
SRR17400793	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Newhall navel orange, NHE_0-1	ILLUMINA	9263545584 bp
SRR17400794	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Gannanzao navel orange, GNZ_0-3	ILLUMINA	8536916068 bp
SRR17400795	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Newhall navel orange, NHE_20-3	ILLUMINA	7633236334 bp
SRR17400796	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Newhall navel orange, NHE_20-2	ILLUMINA	9075758964 bp
SRR17400797	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Newhall navel orange, NHE_20-1	ILLUMINA	6694495306 bp
SRR17400798	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Gannanzao navel orange, GNZ_20-3	ILLUMINA	6922231392 bp
SRR17400799	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Gannanzao navel orange, GNZ_20-2	ILLUMINA	6431090302 bp
SRR17400800	RNA-Seq of Citrus sinensis: 1.5 years plant with leaf from China:Jiangxi, Gannanzao navel orange, GNZ_20-1	ILLUMINA	6737836836 bp

PRJNA873284

Comparative transcriptomic anlaysis of postharvest stored two different type of Citrus sinensis

Jin et al., 2023

113

Library	Title	Platform	Total Base
SRR21197576	RNA-Seq of Citrus sinensis: 90 days after storege fruit, GSM6507410	ILLUMINA	6554252233 bp
SRR21197577	RNA-Seq of Citrus sinensis: 90 days after storege fruit, GSM6507409	ILLUMINA	6607601006 bp
SRR21197578	RNA-Seq of Citrus sinensis: 90 days after storege fruit, GSM6507408	ILLUMINA	7509753142 bp
SRR21197579	RNA-Seq of Citrus sinensis: 90 days after storege fruit, GSM6507407	ILLUMINA	6815112174 bp
SRR21197580	RNA-Seq of Citrus sinensis: 90 days after storege fruit, GSM6507406	ILLUMINA	6178707909 bp
SRR21197581	RNA-Seq of Citrus sinensis: 90 days after storege fruit, GSM6507405	ILLUMINA	5594389236 bp
SRR21197582	RNA-Seq of Citrus sinensis: 60 days after storege fruit, GSM6507404	ILLUMINA	7236898293 bp
SRR21197583	RNA-Seq of Citrus sinensis: 60 days after storege fruit, GSM6507403	ILLUMINA	7263358950 bp
SRR21197584	RNA-Seq of Citrus sinensis: 60 days after storege fruit, GSM6507402	ILLUMINA	7280747484 bp
SRR21197585	RNA-Seq of Citrus sinensis: 60 days after storege fruit, GSM6507401	ILLUMINA	6539874613 bp
SRR21197586	RNA-Seq of Citrus sinensis: 60 days after storege fruit, GSM6507400	ILLUMINA	6444769110 bp
SRR21197587	RNA-Seq of Citrus sinensis: 60 days after storege fruit, GSM6507399	ILLUMINA	6607179923 bp
SRR21197588	RNA-Seq of Citrus sinensis: 30 days after storege fruit, GSM6507398	ILLUMINA	6291553587 bp
SRR21197589	RNA-Seq of Citrus sinensis: 30 days after storege fruit, GSM6507397	ILLUMINA	5240069009 bp
SRR21197590	RNA-Seq of Citrus sinensis: 30 days after storege fruit, GSM6507396	ILLUMINA	7183144334 bp
SRR21197591	RNA-Seq of Citrus sinensis: 30 days after storege fruit, GSM6507395	ILLUMINA	6956809859 bp
SRR21197592	RNA-Seq of Citrus sinensis: 30 days after storege fruit, GSM6507393	ILLUMINA	7109606631 bp
SRR21197593	RNA-Seq of Citrus sinensis: 15 days after storege fruit, GSM6507391	ILLUMINA	6768301158 bp
SRR21197594	RNA-Seq of Citrus sinensis: 15 days after storege fruit, GSM6507390	ILLUMINA	6445952626 bp
SRR21197595	RNA-Seq of Citrus sinensis: 15 days after storege fruit, GSM6507392	ILLUMINA	6493825561 bp
SRR21197596	RNA-Seq of Citrus sinensis: 30 days after storege fruit, GSM6507394	ILLUMINA	7649508116 bp
SRR21197597	RNA-Seq of Citrus sinensis: 15 days after storege fruit, GSM6507389	ILLUMINA	6416214589 bp
SRR21197598	RNA-Seq of Citrus sinensis: 15 days after storege fruit, GSM6507388	ILLUMINA	5513573757 bp
SRR21197599	RNA-Seq of Citrus sinensis: 0 days after storege fruit, GSM6507386	ILLUMINA	6698030394 bp
SRR21197600	RNA-Seq of Citrus sinensis: 0 days after storege fruit, GSM6507384	ILLUMINA	6910076917 bp
SRR21197601	RNA-Seq of Citrus sinensis: 0 days after storege fruit, GSM6507383	ILLUMINA	6784936257 bp
SRR21197602	RNA-Seq of Citrus sinensis: 0 days after storege fruit, GSM6507385	ILLUMINA	6832685876 bp
SRR21197603	RNA-Seq of Citrus sinensis: 15 days after storege fruit, GSM6507387	ILLUMINA	6718176470 bp
SRR21197604	RNA-Seq of Citrus sinensis: 0 days after storege fruit, GSM6507382	ILLUMINA	7010486956 bp
SRR21197605	RNA-Seq of Citrus sinensis: 0 days after storege fruit, GSM6507381	ILLUMINA	6608064246 bp

PRJNA890283

Long non-coding RNA in regulatory network response to disease in citrus

114

Library	Title	Platform	Total Base
SRR21896055	RNA-Seq of Citrus sinensis: 17 week plant with leaf midrib, CLas infection, GSM6631813	ILLUMINA	4111120708 bp
SRR21896056	RNA-Seq of Citrus sinensis: 7 week plant with leaf midrib, CLas infection, GSM6631812	ILLUMINA	3750247400 bp
SRR21896057	RNA-Seq of Citrus sinensis: 0 week plant with leaf midrib, CLas infection, GSM6631811	ILLUMINA	4146520248 bp
SRR21896058	RNA-Seq of Citrus sinensis: 34 week plant with leaf midrib, CLas infection, GSM6631814	ILLUMINA	4471107951 bp
SRR21896059	RNA-Seq of Citrus sinensis: 34 week plant with leaf midrib, CLas infection, GSM6631810	ILLUMINA	4367528693 bp
SRR21896060	RNA-Seq of Citrus sinensis: 17 week plant with leaf midrib, CLas infection, GSM6631809	ILLUMINA	5448928600 bp
SRR21896061	RNA-Seq of Citrus sinensis: 7 week plant with leaf midrib, CLas infection, GSM6631808	ILLUMINA	4140129370 bp
SRR21896062	RNA-Seq of Citrus sinensis: 0 week plant with leaf midrib, CLas infection, GSM6631807	ILLUMINA	4291688337 bp
SRR21896063	RNA-Seq of Citrus sinensis: 17 week plant with leaf midrib, CLas infection, GSM6631805	ILLUMINA	4915304685 bp
SRR21896064	RNA-Seq of Citrus sinensis: 7 week plant with leaf midrib, CLas infection, GSM6631804	ILLUMINA	5108222077 bp
SRR21896065	RNA-Seq of Citrus sinensis: 0 week plant with leaf midrib, CLas infection, GSM6631803	ILLUMINA	4389479821 bp
SRR21896066	RNA-Seq of Citrus sinensis: 34 week plant with leaf midrib, CLas infection, GSM6631806	ILLUMINA	4007924046 bp
SRR21896067	RNA-Seq of Citrus sinensis: 34 week plant with leaf midrib, Mock-infection, GSM6631802	ILLUMINA	7411487140 bp
SRR21896068	RNA-Seq of Citrus sinensis: 17 week plant with leaf midrib, Mock-infection, GSM6631801	ILLUMINA	4278100330 bp
SRR21896069	RNA-Seq of Citrus sinensis: 7 week plant with leaf midrib, Mock-infection, GSM6631800	ILLUMINA	4112309880 bp
SRR21896070	RNA-Seq of Citrus sinensis: 0 week plant with leaf midrib, Mock-infection, GSM6631799	ILLUMINA	4553524115 bp
SRR21896071	RNA-Seq of Citrus sinensis: 17 week plant with leaf midrib, Mock-infection, GSM6631797	ILLUMINA	4629206914 bp
SRR21896072	RNA-Seq of Citrus sinensis: 7 week plant with leaf midrib, Mock-infection, GSM6631796	ILLUMINA	4141851860 bp
SRR21896073	RNA-Seq of Citrus sinensis: 0 week plant with leaf midrib, Mock-infection, GSM6631795	ILLUMINA	4646988312 bp
SRR21896074	RNA-Seq of Citrus sinensis: 34 week plant with leaf midrib, Mock-infection, GSM6631798	ILLUMINA	3529908810 bp
SRR21896075	RNA-Seq of Citrus sinensis: 34 week plant with leaf midrib, Mock-infection, GSM6631794	ILLUMINA	4483635856 bp
SRR21896076	RNA-Seq of Citrus sinensis: 17 week plant with leaf midrib, Mock-infection, GSM6631793	ILLUMINA	7375448123 bp
SRR21896077	RNA-Seq of Citrus sinensis: 7 week plant with leaf midrib, Mock-infection, GSM6631792	ILLUMINA	4422707653 bp
SRR21896078	RNA-Seq of Citrus sinensis: 0 week plant with leaf midrib, Mock-infection, GSM6631791	ILLUMINA	4639719906 bp

PRJNA892523

Transcriptome analysis of Citrus sinensis treated by ABA

Lafuente et al., 2022

115

Library	Title	Platform	Total Base
SRR22013730	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, WPA1	ILLUMINA	2222376664 bp
SRR22013731	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, IP3	ILLUMINA	2067917462 bp
SRR22013732	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, IP2	ILLUMINA	1651443128 bp
SRR22013733	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, IP1	ILLUMINA	2298522744 bp
SRR22013734	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, WP3	ILLUMINA	1165157652 bp
SRR22013735	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, WP2	ILLUMINA	2190136409 bp
SRR22013736	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, WP1	ILLUMINA	2502420313 bp
SRR22013737	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, FHP3	ILLUMINA	2314295940 bp
SRR22013738	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, IPA3	ILLUMINA	2221501763 bp
SRR22013739	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, IPA2	ILLUMINA	2565337145 bp
SRR22013740	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, IPA1	ILLUMINA	2378226281 bp
SRR22013741	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, WPA3	ILLUMINA	1780590115 bp
SRR22013742	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, WPA2	ILLUMINA	2013338472 bp
SRR22013743	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, FHP2	ILLUMINA	2204308908 bp
SRR22013744	RNA-Seq of Citrus sinensis: flavedo from Spain: Valencia\, Moncada, FHP1	ILLUMINA	2554769099 bp

PRJNA923786

RNA-seq data of mature citrus fruits

Zheng et al., 2022

116

Library	Title	Platform	Total Base
SRR23081226	RNA-Seq of Citrus sinensis: fruit flavedo from China: Chongqing, Powell, BW3	BGISEQ	1085160650 bp
SRR23081227	RNA-Seq of Citrus sinensis: fruit flavedo from China: Chongqing, Powell, BW2	BGISEQ	1083306450 bp
SRR23081228	RNA-Seq of Citrus sinensis: fruit flavedo from China: Chongqing, Powell, BW1	BGISEQ	1085435450 bp
SRR23081229	RNA-Seq of Citrus sinensis: fruit flavedo from China: Chongqing, Campbell, XC3	BGISEQ	1085561350 bp
SRR23081230	RNA-Seq of Citrus sinensis: fruit flavedo from China: Chongqing, Campbell, XC2	BGISEQ	1085306900 bp
SRR23081231	RNA-Seq of Citrus sinensis: fruit flavedo from China: Chongqing, Campbell, XC1	BGISEQ	1084328300 bp
SRR23081239	RNA-Seq of Citrus sinensis: fruit flavedo from China: Chongqing, Bingtangcheng, BTC3	BGISEQ	1084703150 bp
SRR23081245	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Hamlin, HML3	BGISEQ	1085307950 bp
SRR23081246	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Hamlin, HML2	BGISEQ	1084410950 bp
SRR23081247	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Hamlin, HML1	BGISEQ	1085264000 bp
SRR23081250	RNA-Seq of Citrus sinensis: fruit flavedo from China: Chongqing, Bingtangcheng, BTC2	BGISEQ	1084782150 bp
SRR23081251	RNA-Seq of Citrus sinensis: fruit flavedo from China: Chongqing, Bingtangcheng, BTC1	BGISEQ	1084055300 bp

PRJNA924350

Citrus Sinensis fruit transcriptome

Zheng et al., 2022

117

Library	Title	Platform	Total Base
SRR23095494	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S2-BP-1	BGISEQ	6329954100 bp
SRR23095495	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S1-YB-3	BGISEQ	6394654200 bp
SRR23095496	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S1-YB-2	BGISEQ	6422391300 bp
SRR23095497	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S1-YB-1	BGISEQ	6416603100 bp
SRR23095498	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S1-BP-3	BGISEQ	5929361700 bp
SRR23095499	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S7-YB-3	BGISEQ	6372419400 bp
SRR23095500	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S7-YB-2	BGISEQ	6442845000 bp
SRR23095501	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S7-YB-1	BGISEQ	6485912400 bp
SRR23095502	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S7-BP-3	BGISEQ	6395105700 bp
SRR23095503	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S7-BP-2	BGISEQ	6387432900 bp
SRR23095504	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S1-BP-2	BGISEQ	6493370400 bp
SRR23095505	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S7-BP-1	BGISEQ	6369845400 bp
SRR23095506	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S6-YB-3	BGISEQ	6420005100 bp
SRR23095507	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S6-YB-2	BGISEQ	6513618900 bp
SRR23095508	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S6-YB-1	BGISEQ	6460612200 bp
SRR23095509	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S6-BP-3	BGISEQ	6480781500 bp
SRR23095510	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S6-BP-2	BGISEQ	6547805400 bp
SRR23095511	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S6-BP-1	BGISEQ	6492349200 bp
SRR23095512	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S5-YB-3	BGISEQ	6432285300 bp
SRR23095513	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S5-YB-2	BGISEQ	6396410100 bp
SRR23095514	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S5-YB-1	BGISEQ	6372428100 bp
SRR23095515	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S1-BP-1	BGISEQ	6420137400 bp
SRR23095516	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S5-BP-3	BGISEQ	6329529900 bp
SRR23095517	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S5-BP-2	BGISEQ	6293308500 bp
SRR23095518	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S5-BP-1	BGISEQ	6502672200 bp
SRR23095519	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S4-YB-3	BGISEQ	6401759700 bp
SRR23095520	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S4-YB-2	BGISEQ	6391959900 bp
SRR23095521	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S4-YB-1	BGISEQ	6342679500 bp
SRR23095522	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S4-BP-3	BGISEQ	6410629800 bp
SRR23095523	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S4-BP-2	BGISEQ	6368565000 bp
SRR23095524	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S4-BP-1	BGISEQ	6401733300 bp
SRR23095525	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S3-YB-3	BGISEQ	6490873800 bp
SRR23095526	RNA-Seq of Citrus sinensis: ovary from China: Zhejiang, Bingtangcheng, S0_ZF_3	BGISEQ	6411059100 bp
SRR23095527	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S3-YB-2	BGISEQ	6351716700 bp
SRR23095528	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S3-YB-1	BGISEQ	6426010800 bp
SRR23095529	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S3-BP-3	BGISEQ	6424446600 bp
SRR23095530	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S3-BP-2	BGISEQ	6384689400 bp
SRR23095531	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S3-BP-1	BGISEQ	6400118700 bp
SRR23095532	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S2-YB-3	BGISEQ	6356625900 bp
SRR23095533	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S2-YB-2	BGISEQ	6409637400 bp
SRR23095534	RNA-Seq of Citrus sinensis: fruit flavedo from China: Zhejiang, Bingtangcheng, S2-YB-1	BGISEQ	6347440200 bp
SRR23095535	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S2-BP-3	BGISEQ	6396870900 bp
SRR23095536	RNA-Seq of Citrus sinensis: fruit albedo from China: Zhejiang, Bingtangcheng, S2-BP-2	BGISEQ	6344229900 bp
SRR23095537	RNA-Seq of Citrus sinensis: ovary from China: Zhejiang, Bingtangcheng, S0_ZF_2	BGISEQ	6302012700 bp
SRR23095538	RNA-Seq of Citrus sinensis: ovary from China: Zhejiang, Bingtangcheng, S0_ZF_1	BGISEQ	6478726500 bp

PRJNA926519

Citrus sinensis raw sequence reads

118

Library	Title	Platform	Total Base
SRR23193662	RNA-Seq of Citrus sinensis: 2 years plant with peeled bark from young stems from USA: Florida, Madam Vinous, T68-1_3	ILLUMINA	4369206470 bp
SRR23193663	RNA-Seq of Citrus sinensis: 2 years plant with peeled bark from young stems from USA: Florida, Madam Vinous, T68-1_2	ILLUMINA	5809563834 bp
SRR23193664	RNA-Seq of Citrus sinensis: 2 years plant with peeled bark from young stems from USA: Florida, Madam Vinous, T68-1_1	ILLUMINA	4442539540 bp
SRR23193665	RNA-Seq of Citrus sinensis: 2 years plant with peeled bark from young stems from USA: Florida, Madam Vinous, T36_3	ILLUMINA	4533813846 bp
SRR23193666	RNA-Seq of Citrus sinensis: 2 years plant with peeled bark from young stems from USA: Florida, Madam Vinous, T36_2	ILLUMINA	5286982562 bp
SRR23193667	RNA-Seq of Citrus sinensis: 2 years plant with peeled bark from young stems from USA: Florida, Madam Vinous, T36_1	ILLUMINA	4506059854 bp
SRR23193668	RNA-Seq of Citrus sinensis: 2 years plant with peeled bark from young stems from USA: Florida, Madam Vinous, Mock_3	ILLUMINA	4436136746 bp
SRR23193669	RNA-Seq of Citrus sinensis: 2 years plant with peeled bark from young stems from USA: Florida, Madam Vinous, Mock_2	ILLUMINA	4557729636 bp
SRR23193670	RNA-Seq of Citrus sinensis: 2 years plant with peeled bark from young stems from USA: Florida, Madam Vinous, Mock_1	ILLUMINA	5042470854 bp

PRJNA934884

Widely targeted metabolomic profiling and transcriptome analysis of Citrus sinensis under magnesium stress

Xiong et al., 2023

119

Library	Title	Platform	Total Base
SRR23506631	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 2MD1	ILLUMINA	9252244200 bp
SRR23506632	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 2MS3	ILLUMINA	8353966500 bp
SRR23506633	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 2MS2	ILLUMINA	8721486000 bp
SRR23506634	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 2MS1	ILLUMINA	9304164600 bp
SRR23506635	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 1MD3	ILLUMINA	8237001000 bp
SRR23506636	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 1MD2	ILLUMINA	7644968400 bp
SRR23506637	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 1MD1	ILLUMINA	7644157800 bp
SRR23506638	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 1MS3	ILLUMINA	8760555900 bp
SRR23506639	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 3MD3	ILLUMINA	9137292900 bp
SRR23506640	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 3MD2	ILLUMINA	7639003500 bp
SRR23506641	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 3MD1	ILLUMINA	7128326400 bp
SRR23506642	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 3MS3	ILLUMINA	7669449300 bp
SRR23506643	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 3MS2	ILLUMINA	9466234500 bp
SRR23506644	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 3MS1	ILLUMINA	6476558400 bp
SRR23506645	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 2MD3	ILLUMINA	8051680500 bp
SRR23506646	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 2MD2	ILLUMINA	7731077100 bp
SRR23506647	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 1MS2	ILLUMINA	7983848100 bp
SRR23506648	RNA-Seq of Citrus sinensis: 13 years plant with peel from China: Leibo County\, Liangshan Prefecture\, Sichuan Province, Leibo County\, Liangshan Prefecture\, Sichuan Province\, China, 1MS1	ILLUMINA	10125642300 bp

Species Info.

Omics Data

Omics Analysis

Seq. Analysis

Omics Analysis

Others

Project