Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
Others

Project

Bioproject Description Publication GVCF File Library Num.
PRJNA172770 Aspen transcriptome. -
614
Library Title Platform Total Base VCF File
SRR546216 RNA-Seq of Populus tremuloides: leaf, MT-5 ILLUMINA 4281132400 bp
SRR546217 RNA-Seq of Populus tremuloides: leaf, MT-6 ILLUMINA 4281132400 bp
SRR546218 RNA-Seq of Populus tremuloides: leaf, MT-8 ILLUMINA 4281132400 bp
SRR548283 RNA-Seq of Populus tremuloides: leaf, AZ-9 ILLUMINA 4281132400 bp
SRR540223 RNA-Seq of Populus tremuloides: leaf, AZ-8 ILLUMINA 4281132400 bp
SRR547441 RNA-Seq of Populus tremuloides: leaf, AZ-9 ILLUMINA 4281132400 bp
PRJNA413418 The RNAseq data from 21 species of dominant tree species in the Wabikon Lake Forest Dynamics Plot in Wisconsin, U.S.A. The plot is part of the Smithsonian ForestGeo Network. G. Swenson et al., 2017
615
Library Title Platform Total Base VCF File
SRR6134157 RNA-Seq of Populus tremuloides: 1 year old plant with leaf from USA: Michigan, NGS_WL_116 ILLUMINA 4288629600 bp
SRR6134160 RNA-Seq of Populus tremuloides: 1 year old plant with leaf from USA: Michigan, NGS_WL_119 ILLUMINA 4243123800 bp
SRR6134161 RNA-Seq of Populus tremuloides: 1 year old plant with leaf from USA: Michigan, NGS_WL_120 ILLUMINA 4294321400 bp
SRR6134162 RNA-Seq of Populus tremuloides: 1 year old plant with leaf from USA: Michigan, NGS_WL_117 ILLUMINA 4247315200 bp
SRR6134163 RNA-Seq of Populus tremuloides: 1 year old plant with leaf from USA: Michigan, NGS_WL_118 ILLUMINA 4239639200 bp
SRR6134164 RNA-Seq of Populus tremuloides: 1 year old plant with leaf from USA: Michigan, NGS_WL_121 ILLUMINA 4281132400 bp
PRJNA556244 In this project, we modeled changes in gene co-expression relationships associated with the evolution of wood formation in a phylogenetic survey of 13 angiosperm tree species from the genera Liriodendron, Liquidambar, Eucalyptus, Populus and Salix. Zinkgraf et al., 2020
616
Library Title Platform Total Base VCF File
SRR9849636 RNA-Seq of Populus tremuloides: Tension wood from USA: Placerville\, CA, AGSZ005_6_S66_L006_R1_001 ILLUMINA 2122560279 bp
SRR9849637 RNA-Seq of Populus tremuloides: Opposite wood from USA: Placerville\, CA, AGSZ005_7_S67_L006_R1_001 ILLUMINA 1287798705 bp
SRR9849638 RNA-Seq of Populus tremuloides: Tension wood from USA: Placerville\, CA, AGSZ005_8_S68_L006_R1_001 ILLUMINA 1768966059 bp
SRR9849639 RNA-Seq of Populus tremuloides: Opposite wood from USA: Placerville\, CA, AGSZ005_9_S69_L006_R1_001 ILLUMINA 1934952189 bp
SRR9849640 RNA-Seq of Populus tremuloides: Tension wood from USA: Placerville\, CA, AGSZ005_10_S70_L006_R1_001 ILLUMINA 1799273931 bp
SRR9849655 RNA-Seq of Populus tremuloides: Opposite wood from USA: Placerville\, CA, AGSZ005_11_S71_L006_R1_001 ILLUMINA 1245360942 bp
SRR9849698 RNA-Seq of Populus tremuloides: mixed from USA: Placerville\, CA, AGSZ011CAGATC_HVT2JCCXX_L4 ILLUMINA 16196605500 bp
SRR9849716 RNA-Seq of Populus tremuloides: Normal wood from USA: Placerville\, CA, AGSZ009_4_S75_L007_R1_001 ILLUMINA 1947018279 bp
SRR9849756 RNA-Seq of Populus tremuloides: mixed from USA: Placerville\, CA, AGSZ010CAGATC_HVT2JCCXX_L3 ILLUMINA 15686240400 bp
SRR9849757 RNA-Seq of Populus tremuloides: Normal wood from USA: Placerville\, CA, AGSZ005_5_S65_L006_R1_001 ILLUMINA 1407457353 bp
SRR9849758 RNA-Seq of Populus tremuloides: Normal wood from USA: Placerville\, CA, AGSZ005_4_S64_L006_R1_001 ILLUMINA 1743118137 bp
SRR9849759 RNA-Seq of Populus tremuloides: Normal wood from USA: Placerville\, CA, AGSZ005_3_S63_L006_R1_001 ILLUMINA 1219390059 bp
SRR9849760 RNA-Seq of Populus tremuloides: Normal wood from USA: Placerville\, CA, AGSZ005_2_S62_L006_R1_001 ILLUMINA 1430947953 bp
SRR9849761 RNA-Seq of Populus tremuloides: Normal wood from USA: Placerville\, CA, AGSZ005_1_S61_L006_R1_001 ILLUMINA 1529770296 bp
PRJNA820879 RNA-seq was used to analyze the whole transcriptomes of Populus tremuloides treated with varying concentrations of nickel salts to identify differences in gene expression that may be associated with nickel resistance and the abiotic stress response. M. Czajka et al., 2022
617
Library Title Platform Total Base VCF File
SRR18508994 RNA-Seq of Populus tremuloides: 800mg/kgNickel treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, HalfNickeldose(800mg/kg) ILLUMINA 6796318466 bp
SRR18508995 RNA-Seq of Populus tremuloides: 1600mg/kgNickel-susceptible treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, TotalNickeldose-susceptible(1600mg/kg) ILLUMINA 7899823586 bp
SRR18508996 RNA-Seq of Populus tremuloides: 1600mg/kgNickel-susceptible treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, TotalNickeldose-susceptible(1600mg/kg) ILLUMINA 6590305431 bp
SRR18508997 RNA-Seq of Populus tremuloides: 1600mg/kgNickel-susceptible treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, TotalNickeldose-susceptible(1600mg/kg) ILLUMINA 6853093593 bp
SRR18508998 RNA-Seq of Populus tremuloides: 1600mg/kgNickel-resistant treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, TotalNickeldose-resistant(1600mg/kg) ILLUMINA 9739981689 bp
SRR18508999 RNA-Seq of Populus tremuloides: 1600mg/kgNickel-resistant treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, TotalNickeldose-resistant(1600mg/kg) ILLUMINA 5414016266 bp
SRR18509000 RNA-Seq of Populus tremuloides: 1600mg/kgNickel-resistant treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, TotalNickeldose-resistant(1600mg/kg) ILLUMINA 7821269665 bp
SRR18509001 RNA-Seq of Populus tremuloides: Water treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, WaterControl ILLUMINA 7244681264 bp
SRR18509002 RNA-Seq of Populus tremuloides: 150mg/kgPotassiumNitrateControl treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, PotassiumNitrateControl(150mg/kg) ILLUMINA 9060047601 bp
SRR18509003 RNA-Seq of Populus tremuloides: 800mg/kgPotassiumNitrateControl treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, PotassiumNitrateControl(800mg/kg) ILLUMINA 8747681913 bp
SRR18509004 RNA-Seq of Populus tremuloides: 1600mg/kgPotassiumNitrateControl treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, PotassiumNitrateControl(1600mg/kg) ILLUMINA 7584720819 bp
SRR18509005 RNA-Seq of Populus tremuloides: 150mg/kgNickel treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, BioavailableNickeldose(150mg/kg) ILLUMINA 7092392497 bp
SRR18509006 RNA-Seq of Populus tremuloides: 150mg/kgNickel treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, BioavailableNickeldose(150mg/kg) ILLUMINA 6382972095 bp
SRR18509007 RNA-Seq of Populus tremuloides: 150mg/kgNickel treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, BioavailableNickeldose(150mg/kg) ILLUMINA 7528871199 bp
SRR18509008 RNA-Seq of Populus tremuloides: 800mg/kgNickel treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, HalfNickeldose(800mg/kg) ILLUMINA 7068029869 bp
SRR18509009 RNA-Seq of Populus tremuloides: 800mg/kgNickel treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, HalfNickeldose(800mg/kg) ILLUMINA 7371503182 bp
SRR18509010 RNA-Seq of Populus tremuloides: Water treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, WaterControl ILLUMINA 7143104096 bp
SRR18509011 RNA-Seq of Populus tremuloides: Water treatment 6 months years old Seedling stage plant with root from Canada: Woodstock\, NB, seedlot# 20001001, WaterControl ILLUMINA 5711670263 bp
PRJNA851830 Intraspecific genetic variation in trembling aspen influences forest structure and function. Our research on 40 traits found a polygenic architecture, with small-effect loci driving most variation. F. L. Riehl et al., 2023
618
Library Title Platform Total Base VCF File
SRR19786988 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_118 ILLUMINA 4462876800 bp
SRR19786989 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_101 ILLUMINA 4873331700 bp
SRR19786990 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_080 ILLUMINA 5104922400 bp
SRR19786991 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_051 ILLUMINA 5240593800 bp
SRR19786992 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_Sau-3 ILLUMINA 5888383800 bp
SRR19786993 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_PI-11 ILLUMINA 5841594000 bp
SRR19786994 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_Dan-1 ILLUMINA 5408180700 bp
SRR19786995 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_765 ILLUMINA 5565864000 bp
SRR19786996 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_755 ILLUMINA 6671659500 bp
SRR19786997 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_747 ILLUMINA 5339753400 bp
SRR19786998 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_745 ILLUMINA 5123180700 bp
SRR19786999 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_708 ILLUMINA 5976328800 bp
SRR19787000 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_701 ILLUMINA 6106416900 bp
SRR19787001 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_046 ILLUMINA 5178449700 bp
SRR19787002 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_654 ILLUMINA 5310106500 bp
SRR19787003 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_647 ILLUMINA 6064876200 bp
SRR19787004 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_631 ILLUMINA 4117615500 bp
SRR19787005 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_625 ILLUMINA 3566189400 bp
SRR19787006 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_620 ILLUMINA 4294885800 bp
SRR19787007 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_610 ILLUMINA 4459982400 bp
SRR19787008 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_604 ILLUMINA 4626496800 bp
SRR19787009 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_514 ILLUMINA 5746927200 bp
SRR19787010 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_369 ILLUMINA 4602150600 bp
SRR19787011 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_368 ILLUMINA 4264594800 bp
SRR19787012 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_043 ILLUMINA 4874355600 bp
SRR19787013 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_342 ILLUMINA 4616168100 bp
SRR19787014 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_329 ILLUMINA 4982526900 bp
SRR19787015 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_328 ILLUMINA 5090701800 bp
SRR19787016 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_326 ILLUMINA 4700310600 bp
SRR19787017 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_317 ILLUMINA 5182509000 bp
SRR19787018 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_316 ILLUMINA 4744226700 bp
SRR19787019 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_306 ILLUMINA 5365267200 bp
SRR19787020 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_292 ILLUMINA 5603135100 bp
SRR19787021 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_261 ILLUMINA 4679909700 bp
SRR19787022 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_259 ILLUMINA 4869237900 bp
SRR19787023 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_015 ILLUMINA 4979186400 bp
SRR19787024 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_251 ILLUMINA 4644878100 bp
SRR19787025 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_249 ILLUMINA 4259385900 bp
SRR19787026 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_241 ILLUMINA 4377406500 bp
SRR19787027 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_233 ILLUMINA 5178964500 bp
SRR19787028 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_224 ILLUMINA 4561448700 bp
SRR19787029 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_219 ILLUMINA 4716269400 bp
SRR19787030 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_205 ILLUMINA 6501282600 bp
SRR19787031 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_198 ILLUMINA 5724587400 bp
SRR19787032 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_187 ILLUMINA 5011530900 bp
SRR19787033 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_163 ILLUMINA 4424048700 bp
SRR19787034 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_012 ILLUMINA 4731126300 bp
SRR19787035 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_159 ILLUMINA 4660532700 bp
SRR19787036 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_158 ILLUMINA 5366878500 bp
SRR19787037 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_146 ILLUMINA 5180556000 bp
SRR19787038 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_143 ILLUMINA 4802739300 bp
SRR19787039 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_142 ILLUMINA 5084946600 bp
SRR19787040 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_139 ILLUMINA 4268520600 bp
SRR19787041 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_136 ILLUMINA 4179519600 bp
SRR19787042 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_134 ILLUMINA 4330654500 bp
SRR19787043 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_131 ILLUMINA 4849394400 bp
SRR19787044 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_128 ILLUMINA 4110274200 bp
SRR19787045 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_011 ILLUMINA 5248317900 bp
SRR19787046 RNA-Seq of Populus tremuloides: 7 years old plant with foliar from USA: WisAsp common garden\, Arlington Agricultural Research Station\, Wisconsin, WisAsp_002 ILLUMINA 5653382700 bp
PRJNA896247 A haplotype-resolved reference genome of Quercus alba sheds light on the evolutionary history of oaks Lu et al., 2023
619
Library Title Platform Total Base VCF File
SRR22133658 RNA-Seq of Populus tremuloides: leaf from USA: the University of Notre Dame Environmental Research Center, NG29 ILLUMINA 6030570600 bp

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