Bioproject |
Description |
Publication |
GVCF File |
Library Num. |
PRJNA420012 |
Identified candidate genes related to salt stress in leaf |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR6327778 |
RNA-Seq of Salix suchowensis: leaf, Sample_L12H |
ILLUMINA |
6105350616 bp |
|
SRR6327779 |
RNA-Seq of Salix suchowensis: leaf, Sample_L6H |
ILLUMINA |
5068249892 bp |
|
SRR6327780 |
RNA-Seq of Salix suchowensis: leaf, Sample_L2H |
ILLUMINA |
4159300190 bp |
|
SRR6327781 |
RNA-Seq of Salix suchowensis: leaf, Sample_L0H |
ILLUMINA |
3307568806 bp |
|
SRR6327782 |
RNA-Seq of Salix suchowensis: leaf, Sample_L48H |
ILLUMINA |
6540497602 bp |
|
SRR6327783 |
RNA-Seq of Salix suchowensis: leaf, Sample_L24H |
ILLUMINA |
5025703844 bp |
|
|
PRJNA420013 |
Identified candidate genes related to salt stress in root |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR6387550 |
RNA-Seq of Salix suchowensis: root, Sample_R48H |
ILLUMINA |
2945471080 bp |
|
SRR6387551 |
RNA-Seq of Salix suchowensis: root, Sample_R24H |
ILLUMINA |
4743583776 bp |
|
SRR6387552 |
RNA-Seq of Salix suchowensis: root, Sample_R12H |
ILLUMINA |
4536283700 bp |
|
SRR6387553 |
RNA-Seq of Salix suchowensis: root, Sample_R6H |
ILLUMINA |
3840577116 bp |
|
SRR6387554 |
RNA-Seq of Salix suchowensis: root, Sample_R2H |
ILLUMINA |
4704531318 bp |
|
SRR6387555 |
RNA-Seq of Salix suchowensis: root, Sample_R0H |
ILLUMINA |
4491946518 bp |
|
|
PRJNA556244 |
Evolutionary network genomics of wood formation in a phylogenetic survey of angiosperm forest trees |
Zinkgraf et al., 2020 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR9849616 |
RNA-Seq of Salix suchowensis: normal wood from China: Beijing, rep3, s8L-S1_HJ3CKCCXX_L5 |
ILLUMINA |
10286190000 bp |
|
SRR9849617 |
RNA-Seq of Salix suchowensis: opposite wood from China: Beijing, rep2, s3L-OW_HJ3CWCCXX_L7 |
ILLUMINA |
10660413000 bp |
|
SRR9849618 |
RNA-Seq of Salix suchowensis: opposite wood from China: Beijing, rep1, s6L-OW_HJ3CWCCXX_L7 |
ILLUMINA |
22766775000 bp |
|
SRR9849619 |
RNA-Seq of Salix suchowensis: normal wood from China: Beijing, rep2, s4L-S1_HJ3CKCCXX_L3 |
ILLUMINA |
10622558700 bp |
|
SRR9849620 |
RNA-Seq of Salix suchowensis: normal wood from China: Beijing, rep1, s2L-S1_HJ3CWCCXX_L1 |
ILLUMINA |
22569353700 bp |
|
SRR9849621 |
RNA-Seq of Salix suchowensis: tension wood from China: Beijing, rep3, s5L-TW_HJ3L2CCXX_L6 |
ILLUMINA |
13045181100 bp |
|
SRR9849622 |
RNA-Seq of Salix suchowensis: tension wood from China: Beijing, rep2, s3L-TW_HJ3L2CCXX_L6 |
ILLUMINA |
13876131600 bp |
|
SRR9849623 |
RNA-Seq of Salix suchowensis: tension wood from China: Beijing, rep1, s6L-TW_HJ3CWCCXX_L7 |
ILLUMINA |
12324796200 bp |
|
SRR9849624 |
RNA-Seq of Salix suchowensis: opposite wood from China: Beijing, rep3, s5L-OW_HJ3CKCCXX_L8 |
ILLUMINA |
12216144300 bp |
|
|
PRJNA664878 |
We performed a time-sequential study to uncover the genetic factors underlying the dynamic growth of a woody plant. |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR12689554 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t2_T04 |
ILLUMINA |
8432193770 bp |
|
SRR12689555 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t2_T03 |
ILLUMINA |
7613264254 bp |
|
SRR12689556 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t2_T02 |
ILLUMINA |
7236351550 bp |
|
SRR12689557 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t2_T01 |
ILLUMINA |
7648456012 bp |
|
SRR12689558 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t5_T48 |
ILLUMINA |
6221724724 bp |
|
SRR12689559 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t5_T47 |
ILLUMINA |
8469869976 bp |
|
SRR12689560 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t5_T46 |
ILLUMINA |
9655713422 bp |
|
SRR12689561 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t5_T45 |
ILLUMINA |
8751476034 bp |
|
SRR12689562 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t5_T44 |
ILLUMINA |
8501511714 bp |
|
SRR12689563 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t5_T43 |
ILLUMINA |
9156697034 bp |
|
SRR12689564 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t4_T36 |
ILLUMINA |
9306670172 bp |
|
SRR12689565 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t4_T35 |
ILLUMINA |
9084379576 bp |
|
SRR12689566 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t4_T34 |
ILLUMINA |
8069766736 bp |
|
SRR12689567 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t4_T33 |
ILLUMINA |
7055453086 bp |
|
SRR12689568 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t1_T66 |
ILLUMINA |
8510150010 bp |
|
SRR12689569 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t4_T32 |
ILLUMINA |
8050771350 bp |
|
SRR12689570 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t4_T31 |
ILLUMINA |
7055900634 bp |
|
SRR12689571 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t3_T24 |
ILLUMINA |
6934897758 bp |
|
SRR12689572 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t3_T23 |
ILLUMINA |
7798098122 bp |
|
SRR12689573 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t3_T22 |
ILLUMINA |
7780077978 bp |
|
SRR12689574 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t3_T21 |
ILLUMINA |
7469432622 bp |
|
SRR12689575 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t3_T20 |
ILLUMINA |
9591380402 bp |
|
SRR12689576 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t3_T19 |
ILLUMINA |
8027831068 bp |
|
SRR12689577 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t2_T12 |
ILLUMINA |
8592104726 bp |
|
SRR12689578 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t2_T11 |
ILLUMINA |
8363546458 bp |
|
SRR12689579 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t1_T65 |
ILLUMINA |
7892651440 bp |
|
SRR12689580 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t2_T10 |
ILLUMINA |
8509693154 bp |
|
SRR12689581 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t2_T09 |
ILLUMINA |
7385963746 bp |
|
SRR12689582 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t2_T08 |
ILLUMINA |
7167054214 bp |
|
SRR12689583 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t2_T07 |
ILLUMINA |
9927495384 bp |
|
SRR12689584 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t1_T72 |
ILLUMINA |
8324100306 bp |
|
SRR12689585 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t1_T71 |
ILLUMINA |
10275636460 bp |
|
SRR12689586 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, Cambium_high_t1_T70 |
ILLUMINA |
8860364026 bp |
|
SRR12689587 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t1_T69 |
ILLUMINA |
7960503710 bp |
|
SRR12689588 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t1_T68 |
ILLUMINA |
7802917592 bp |
|
SRR12689589 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, Cambium_short_t1_T67 |
ILLUMINA |
8119005652 bp |
|
SRR12689590 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t1_T64 |
ILLUMINA |
8390358632 bp |
|
SRR12689591 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t5_T42 |
ILLUMINA |
8755074108 bp |
|
SRR12689592 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t5_T41 |
ILLUMINA |
6919554416 bp |
|
SRR12689593 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t5_T40 |
ILLUMINA |
8067236184 bp |
|
SRR12689594 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t5_T39 |
ILLUMINA |
8671160752 bp |
|
SRR12689595 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t5_T38 |
ILLUMINA |
8275391480 bp |
|
SRR12689596 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t5_T37 |
ILLUMINA |
8229671546 bp |
|
SRR12689597 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t4_T30 |
ILLUMINA |
7914976676 bp |
|
SRR12689598 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t4_T29 |
ILLUMINA |
6139043808 bp |
|
SRR12689599 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t4_T28 |
ILLUMINA |
7529516086 bp |
|
SRR12689600 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t4_T27 |
ILLUMINA |
7838625076 bp |
|
SRR12689601 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t1_T63 |
ILLUMINA |
8331033554 bp |
|
SRR12689602 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t4_T26 |
ILLUMINA |
8119515654 bp |
|
SRR12689603 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t4_T25 |
ILLUMINA |
8578062710 bp |
|
SRR12689604 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t3_T18 |
ILLUMINA |
8704308190 bp |
|
SRR12689605 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t3_T17 |
ILLUMINA |
8599230314 bp |
|
SRR12689606 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t3_T16 |
ILLUMINA |
8668908228 bp |
|
SRR12689607 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t3_T15 |
ILLUMINA |
7995008174 bp |
|
SRR12689608 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t3_T14 |
ILLUMINA |
8377375516 bp |
|
SRR12689609 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t3_T13 |
ILLUMINA |
8761562534 bp |
|
SRR12689610 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t2_T06 |
ILLUMINA |
7989290854 bp |
|
SRR12689611 |
RNA-Seq of Salix suchowensis: high plant with leaf from China: Nanjing, leaf_high_t2_T05 |
ILLUMINA |
8367032208 bp |
|
SRR12689612 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t1_T62 |
ILLUMINA |
8811839918 bp |
|
SRR12689613 |
RNA-Seq of Salix suchowensis: short plant with leaf from China: Nanjing, leaf_short_t1_T61 |
ILLUMINA |
9974933082 bp |
|
|
PRJNA719970 |
time-sequential RNA sequencing for willow cambium in a full growth cycle |
Wei et al., 2021 |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR14149284 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 1, S3412_t2_1 |
ILLUMINA |
8509693154 bp |
|
SRR14149285 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 3, S328_t2_3 |
ILLUMINA |
7385963746 bp |
|
SRR14149286 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 2, S328_t2_2 |
ILLUMINA |
7167054214 bp |
|
SRR14149287 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 1, S328_t2_1 |
ILLUMINA |
9927495384 bp |
|
SRR14149288 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 3, S3412_t1_3 |
ILLUMINA |
8324100306 bp |
|
SRR14149289 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 2, S3412_t1_2 |
ILLUMINA |
10275636460 bp |
|
SRR14149290 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 3, S3412_t6_3 |
ILLUMINA |
6736439508 bp |
|
SRR14149291 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 2, S3412_t6_2 |
ILLUMINA |
6394456432 bp |
|
SRR14149292 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 1, S3412_t6_1 |
ILLUMINA |
6450785608 bp |
|
SRR14149293 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 3, S328_t6_3 |
ILLUMINA |
8008343118 bp |
|
SRR14149294 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 2, S328_t6_2 |
ILLUMINA |
9250546968 bp |
|
SRR14149295 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 1, S328_t6_1 |
ILLUMINA |
8008368978 bp |
|
SRR14149296 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 1, S3412_t1_1 |
ILLUMINA |
8860364026 bp |
|
SRR14149297 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 3, S3412_t5_3 |
ILLUMINA |
6221724724 bp |
|
SRR14149298 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 2, S3412_t5_2 |
ILLUMINA |
8469869976 bp |
|
SRR14149299 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 1, S3412_t5_1 |
ILLUMINA |
9655713422 bp |
|
SRR14149300 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 3, S328_t5_3 |
ILLUMINA |
8751476034 bp |
|
SRR14149301 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 2, S328_t5_2 |
ILLUMINA |
8501511714 bp |
|
SRR14149302 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 1, S328_t5_1 |
ILLUMINA |
9156697034 bp |
|
SRR14149303 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 3, S3412_t4_3 |
ILLUMINA |
9306670172 bp |
|
SRR14149304 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 2, S3412_t4_2 |
ILLUMINA |
9084379576 bp |
|
SRR14149305 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 1, S3412_t4_1 |
ILLUMINA |
8069766736 bp |
|
SRR14149306 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 3, S328_t4_3 |
ILLUMINA |
7055453086 bp |
|
SRR14149307 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 3, S328_t1_3 |
ILLUMINA |
7960503710 bp |
|
SRR14149308 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 2, S328_t4_2 |
ILLUMINA |
8050771350 bp |
|
SRR14149309 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 1, S328_t4_1 |
ILLUMINA |
7055900634 bp |
|
SRR14149310 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 3, S3412_t3_3 |
ILLUMINA |
6934897758 bp |
|
SRR14149311 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 2, S3412_t3_2 |
ILLUMINA |
7798098122 bp |
|
SRR14149312 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 1, S3412_t3_1 |
ILLUMINA |
7780077978 bp |
|
SRR14149313 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 3, S328_t3_3 |
ILLUMINA |
7469432622 bp |
|
SRR14149314 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 2, S328_t3_2 |
ILLUMINA |
9591380402 bp |
|
SRR14149315 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 1, S328_t3_1 |
ILLUMINA |
8027831068 bp |
|
SRR14149316 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 3, S3412_t2_3 |
ILLUMINA |
8592104726 bp |
|
SRR14149317 |
RNA-Seq of Salix suchowensis: high plant with cambium from China: Nanjing, replicate = biological replicate 2, S3412_t2_2 |
ILLUMINA |
8363546458 bp |
|
SRR14149318 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 2, S328_t1_2 |
ILLUMINA |
7802917592 bp |
|
SRR14149319 |
RNA-Seq of Salix suchowensis: short plant with cambium from China: Nanjing, replicate = biological replicate 1, S328_t1_1 |
ILLUMINA |
8119005652 bp |
|
|
PRJNA795846 |
RNA-seq analyses with S. suchowensis under Cd treatment |
- |
|
|
Library |
Title |
Platform |
Total Base |
VCF File |
SRR17579124 |
RNA-Seq of Salix suchowensis: 4 weeks Cd treatment plant with leaf from China, replicate = biological replicate 1, B10 |
ILLUMINA |
7593702600 bp |
|
SRR17579125 |
RNA-Seq of Salix suchowensis: 4 weeks without Cd plant with leaf from China, replicate = biological replicate 3, B9 |
ILLUMINA |
6944461200 bp |
|
SRR17579126 |
RNA-Seq of Salix suchowensis: 4 weeks without Cd plant with leaf from China, replicate = biological replicate 2, B8 |
ILLUMINA |
7593020400 bp |
|
SRR17579127 |
RNA-Seq of Salix suchowensis: 4 weeks without Cd plant with leaf from China, replicate = biological replicate 1, B7 |
ILLUMINA |
7743336300 bp |
|
SRR17579128 |
RNA-Seq of Salix suchowensis: 4 weeks Cd treatment plant with root from China, replicate = biological replicate 3, B6 |
ILLUMINA |
7647156900 bp |
|
SRR17579129 |
RNA-Seq of Salix suchowensis: 4 weeks Cd treatment plant with root from China, replicate = biological replicate 2, B5 |
ILLUMINA |
9317749500 bp |
|
SRR17579130 |
RNA-Seq of Salix suchowensis: 4 weeks Cd treatment plant with root from China, replicate = biological replicate 1, B4 |
ILLUMINA |
9651244500 bp |
|
SRR17579131 |
RNA-Seq of Salix suchowensis: 4 weeks without Cd plant with root from China, replicate = biological replicate 3, B3 |
ILLUMINA |
8103726300 bp |
|
SRR17579132 |
RNA-Seq of Salix suchowensis: 4 weeks Cd treatment plant with leaf from China, replicate = biological replicate 3, B12 |
ILLUMINA |
8144283000 bp |
|
SRR17579133 |
RNA-Seq of Salix suchowensis: 4 weeks Cd treatment plant with leaf from China, replicate = biological replicate 2, B11 |
ILLUMINA |
8864079300 bp |
|
SRR17579134 |
RNA-Seq of Salix suchowensis: 4 weeks without Cd plant with root from China, replicate = biological replicate 2, B2 |
ILLUMINA |
10083349800 bp |
|
SRR17579135 |
RNA-Seq of Salix suchowensis: 4 weeks without Cd plant with root from China, replicate = biological replicate 1, B1 |
ILLUMINA |
7171053300 bp |
|
|
PRJNA827350 |
11 F1 Salix sequence data, illumina wgs, nanopore, dnb-seq rna-seq |
Hyden et al., 2023 |
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Library |
Title |
Platform |
Total Base |
VCF File |
SRR18795216 |
RNA-Seq of Salix suchowensis: P63 ecotype plant with xylem, P63Xylem_dnb_seq_rna |
DNBSEQ |
7231103400 bp |
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SRR18795217 |
RNA-Seq of Salix suchowensis: P63 ecotype plant with root, P63Root_dnb_seq_rna |
DNBSEQ |
6186792000 bp |
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SRR18795218 |
RNA-Seq of Salix suchowensis: P63 ecotype plant with petioles, P63Petioles_dnb_seq_rna |
DNBSEQ |
7179846600 bp |
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SRR18795219 |
RNA-Seq of Salix suchowensis: P63 ecotype plant with nodes, P63Nodes_dnb_seq_rna |
DNBSEQ |
7160809500 bp |
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SRR18795220 |
RNA-Seq of Salix suchowensis: P63 ecotype plant with mature leaves, P63Matureleaves_dnb_seq_rna |
DNBSEQ |
7157284200 bp |
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SRR18795221 |
RNA-Seq of Salix suchowensis: P63 ecotype plant with internodes, P63Internodes_dnb_seq_rna |
DNBSEQ |
6422799900 bp |
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SRR18795231 |
RNA-Seq of Salix suchowensis: P295 ecotype plant with young stem, P295Youngstem_dnb_seq_rna |
DNBSEQ |
6193999500 bp |
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SRR18795232 |
RNA-Seq of Salix suchowensis: P295 ecotype plant with young leaf, P295Youngleaf_dnb_seq_rna |
DNBSEQ |
6179143800 bp |
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SRR18795233 |
RNA-Seq of Salix suchowensis: P295 ecotype plant with xylem, P295Xylem_dnb_seq_rna |
DNBSEQ |
6190010700 bp |
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SRR18795234 |
RNA-Seq of Salix suchowensis: P295 ecotype plant with root, P295Root_dnb_seq_rna |
DNBSEQ |
6175070700 bp |
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SRR18795235 |
RNA-Seq of Salix suchowensis: P295 ecotype plant with petioles, P295Petioles_dnb_seq_rna |
DNBSEQ |
6204011700 bp |
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SRR18795236 |
RNA-Seq of Salix suchowensis: P295 ecotype plant with nodes, P295Nodes_dnb_seq_rna |
DNBSEQ |
6255944400 bp |
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SRR18795238 |
RNA-Seq of Salix suchowensis: P295 ecotype plant with mature leaves, P295Matureleaves_dnb_seq_rna |
DNBSEQ |
6033149700 bp |
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SRR18795239 |
RNA-Seq of Salix suchowensis: P295 ecotype plant with internodes, P295Internodes_dnb_seq_rna |
DNBSEQ |
6013620300 bp |
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SRR18795240 |
RNA-Seq of Salix suchowensis: P294 ecotype plant with young stem, P294Youngstem_dnb_seq_rna |
DNBSEQ |
6270111300 bp |
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SRR18795241 |
RNA-Seq of Salix suchowensis: P294 ecotype plant with young leaf, P294Youngleaf_dnb_seq_rna |
DNBSEQ |
6271468200 bp |
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SRR18795242 |
RNA-Seq of Salix suchowensis: P294 ecotype plant with xylem, P294Xylem_dnb_seq_rna |
DNBSEQ |
6240381600 bp |
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SRR18795243 |
RNA-Seq of Salix suchowensis: P294 ecotype plant with root, P294Root_dnb_seq_rna |
DNBSEQ |
6048329100 bp |
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SRR18795244 |
RNA-Seq of Salix suchowensis: P294 ecotype plant with petioles, P294Petioles_dnb_seq_rna |
DNBSEQ |
6185090100 bp |
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SRR18795245 |
RNA-Seq of Salix suchowensis: P294 ecotype plant with nodes, P294Nodes_dnb_seq_rna |
DNBSEQ |
6268690500 bp |
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SRR18795246 |
RNA-Seq of Salix suchowensis: P294 ecotype plant with mature leaves, P294Matureleaves_dnb_seq_rna |
DNBSEQ |
6033129900 bp |
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SRR18795247 |
RNA-Seq of Salix suchowensis: P294 ecotype plant with internodes, P294Internodes_dnb_seq_rna |
DNBSEQ |
6020257800 bp |
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SRR18795289 |
RNA-Seq of Salix suchowensis: P63 ecotype plant with young stem, P63Youngstem_dnb_seq_rna |
DNBSEQ |
7243752900 bp |
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SRR18795290 |
RNA-Seq of Salix suchowensis: P63 ecotype plant with young leaf, P63Youngleaf_dnb_seq_rna |
DNBSEQ |
6166398600 bp |
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PRJNA888070 |
Long Read RNA-Sequencing from leaf and root tissue from ten shrub willow genotypes across six species |
Hyden et al., 2023 |
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Library |
Title |
Platform |
Total Base |
VCF File |
SRR21875708 |
RNA-Seq of Salix suchowensis: female plant with root from USA, 94006, 94006 Root |
OXFORD_NANOPORE |
628809156 bp |
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SRR21875709 |
RNA-Seq of Salix suchowensis: female plant with leaf from USA, 94006, 94006 leaf |
OXFORD_NANOPORE |
4638119016 bp |
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SRR21875710 |
RNA-Seq of Salix suchowensis: male plant with root from USA, 94001, 94001 Root |
OXFORD_NANOPORE |
3158397665 bp |
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SRR21875711 |
RNA-Seq of Salix suchowensis: male plant with leaf from USA, 94001, 94001 leaf |
OXFORD_NANOPORE |
4563600511 bp |
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SRR21875712 |
RNA-Seq of Salix suchowensis: female plant with root from USA, 07-MBG-5027, 07-MBG-5027 Root |
OXFORD_NANOPORE |
4298713522 bp |
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SRR21875713 |
RNA-Seq of Salix suchowensis: female plant with leaf from USA, 07-MBG-5027, 07-MBG-5027 leaf |
OXFORD_NANOPORE |
3892694306 bp |
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SRR21875714 |
RNA-Seq of Salix suchowensis: male plant with root from USA, 04-FF-016, 04-FF-016 Root |
OXFORD_NANOPORE |
6417295997 bp |
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SRR21875715 |
RNA-Seq of Salix suchowensis: male plant with leaf from USA, 04-FF-016, 04-FF-016 leaf |
OXFORD_NANOPORE |
1148267089 bp |
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SRR21875716 |
RNA-Seq of Salix suchowensis: female plant with root from USA, SH3, SH3 Root |
OXFORD_NANOPORE |
1018366295 bp |
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SRR21875717 |
RNA-Seq of Salix suchowensis: female plant with leaf from USA, SH3, SH3 leaf |
OXFORD_NANOPORE |
2333975650 bp |
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SRR21875718 |
RNA-Seq of Salix suchowensis: female plant with root from USA, P336, P336 Root |
OXFORD_NANOPORE |
2140131603 bp |
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SRR21875719 |
RNA-Seq of Salix suchowensis: female plant with leaf from USA, P336, P336 leaf |
OXFORD_NANOPORE |
3460385957 bp |
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SRR21875720 |
RNA-Seq of Salix suchowensis: female plant with root from USA, P295, P295 Root |
OXFORD_NANOPORE |
283261788 bp |
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SRR21875721 |
RNA-Seq of Salix suchowensis: female plant with leaf from USA, P295, P295 leaf |
OXFORD_NANOPORE |
11247394571 bp |
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SRR21875722 |
RNA-Seq of Salix suchowensis: female plant with root from USA, P294, P294 Root |
OXFORD_NANOPORE |
1154331541 bp |
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SRR21875723 |
RNA-Seq of Salix suchowensis: female plant with leaf from USA, P294, P294 leaf |
OXFORD_NANOPORE |
10355369803 bp |
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SRR21875724 |
RNA-Seq of Salix suchowensis: male plant with root from USA, P63, P63 Root |
OXFORD_NANOPORE |
624519901 bp |
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SRR21875725 |
RNA-Seq of Salix suchowensis: male plant with leaf from USA, P63, P63 leaf |
OXFORD_NANOPORE |
2967297091 bp |
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SRR21875726 |
RNA-Seq of Salix suchowensis: male plant with root from USA, 04-BN-051, 04-BN-051 Root |
OXFORD_NANOPORE |
4143408003 bp |
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SRR21875727 |
RNA-Seq of Salix suchowensis: male plant with leaf from USA, 04-BN-051, 04-BN-051 leaf |
OXFORD_NANOPORE |
8460213653 bp |
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