Project

Bioproject Description Publication GVCF File Library Num.
PRJNA212863 The Amborella Genome Sequencing Project is a collaborative NSF-funded project that seeks to produce a high-quality finished genome sequence that will serve as a reference in comparative evolutionary analyses to shed light on the genomic characteristics of the last common ancestor of extant flowering plants. Amborella Genome Project et al., 2013
Library Title Platform Total Base VCF File
SRR954504 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Amieu island tropical moist broadleaf forest, Amtr_NCAM_013 ILLUMINA 12941560058 bp
SRR954506 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Boregaou island tropical moist broadleaf forest, Amtr_NCBO_010 ILLUMINA 37944507998 bp
SRR954507 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Aoupinie island tropical moist broadleaf forest, Amtr_NCAOC_010 ILLUMINA 8887440056 bp
SRR954508 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Ba Houailou island tropical moist broadleaf forest, Amtr_NCBA_02 ILLUMINA 33217216330 bp
SRR954509 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Dogny island tropical moist broadleaf forest, Amtr_NCDOB_010 ILLUMINA 11998204504 bp
SRR954510 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Me Fomechawa island tropical moist broadleaf forest, Amtr_NCMF_01 ILLUMINA 7333652016 bp
SRR954511 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Me Ori island tropical moist broadleaf forest, Amtr_NCMO_08 ILLUMINA 9609436132 bp
SRR954512 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Nakada island tropical moist broadleaf forest, Amtr_NCNAA_011 ILLUMINA 7104883986 bp
SRR954513 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Ponandou island tropical moist broadleaf forest, Amtr_NCPO_012 ILLUMINA 10389885958 bp
SRR954514 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Pwicate island tropical moist broadleaf forest, Amtr_NCPWB_011 ILLUMINA 11870352038 bp
SRR954515 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Tchamba island tropical moist broadleaf forest, Amtr_NCTC_012 ILLUMINA 10796568720 bp
SRR954516 WGS of Amborella trichopoda: wild collected free living autotroph diploid plant with silica gel dried leaf from New Caledonia: Tonine island tropical moist broadleaf forest, Amtr_NCTOB_012 ILLUMINA 17505065884 bp
SRR954304 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz ILLUMINA 5709373492 bp
SRR954308 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from Germany: Bonn Botanic Garden, Amtr_Bonn ILLUMINA 6422829416 bp
SRR7500282 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_010 ILLUMINA 8560367097 bp
SRR7500287 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_011 ILLUMINA 5205008784 bp
SRR7500289 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_073 ILLUMINA 7481762740 bp
SRR7500291 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_068 ILLUMINA 7514578420 bp
SRR7500294 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_061 ILLUMINA 9673068758 bp
SRR7500296 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_015 ILLUMINA 11217780281 bp
SRR7500298 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_017 ILLUMINA 5792910623 bp
SRR7500299 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_019 ILLUMINA 5264184419 bp
SRR7500301 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_021 ILLUMINA 8233248838 bp
SRR7500302 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_022 ILLUMINA 5942433207 bp
SRR7500304 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_056 ILLUMINA 8244537788 bp
SRR7500305 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_055 ILLUMINA 6924745531 bp
SRR7500307 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_028 ILLUMINA 6949781129 bp
SRR7500309 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_054 ILLUMINA 11441933740 bp
SRR7500311 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_035 ILLUMINA 9709246203 bp
SRR7500314 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_036 ILLUMINA 8170572631 bp
SRR7500279 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_007 ILLUMINA 5330531023 bp
SRR7500280 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_008 ILLUMINA 8738001722 bp
SRR7500281 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_009 ILLUMINA 6897915338 bp
SRR7500283 WGS of Amborella trichopoda: male plant with leaf from USA: Georgia\, Atlanta, Am_1_2 ILLUMINA 13935313195 bp
SRR7500284 WGS of Amborella trichopoda: female plant with leaf from USA: California\, Santa Cruz, Am_3_2 ILLUMINA 65553380355 bp
SRR7500285 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_005 ILLUMINA 7658528073 bp
SRR7500286 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_006 ILLUMINA 6790156474 bp
SRR7500288 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_013 ILLUMINA 6212399331 bp
SRR7500290 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_074 ILLUMINA 9406926832 bp
SRR7500292 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_071 ILLUMINA 14119258322 bp
SRR7500293 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_057 ILLUMINA 13784648664 bp
SRR7500295 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_014 ILLUMINA 5743783189 bp
SRR7500297 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_016 ILLUMINA 7778208581 bp
SRR7500300 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_020 ILLUMINA 11036870009 bp
SRR7500303 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_030 ILLUMINA 25541331750 bp
SRR7500306 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_051 ILLUMINA 9232232629 bp
SRR7500308 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_050 ILLUMINA 7181202745 bp
SRR7500310 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_052 ILLUMINA 12843531425 bp
SRR7500312 WGS of Amborella trichopoda: female plant with leaf from USA: Pennsylvania\, State College, Ambo_032 ILLUMINA 5581136219 bp
SRR7500313 WGS of Amborella trichopoda: male plant with leaf from USA: Pennsylvania\, State College, Ambo_038 ILLUMINA 6411852641 bp
SRR953985 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 784591169 bp
SRR953986 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 753239236 bp
SRR953987 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 897423080 bp
SRR953988 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 880382944 bp
SRR953989 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 801572336 bp
SRR953990 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 839119096 bp
SRR953991 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 884993351 bp
SRR953993 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 861942883 bp
SRR953994 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 874117839 bp
SRR953995 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 851737705 bp
SRR953996 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 886805506 bp
SRR953997 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 362193984 bp
SRR953998 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 822618110 bp
SRR953999 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 764800829 bp
SRR954000 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 866562177 bp
SRR954001 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 789720185 bp
SRR954002 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 808592243 bp
SRR954003 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 533396979 bp
SRR954004 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 621747333 bp
SRR954006 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 684279272 bp
SRR954007 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 790790867 bp
SRR954008 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 765094440 bp
SRR954009 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 711094663 bp
SRR954010 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 590119509 bp
SRR954011 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 697942325 bp
SRR954012 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 718427233 bp
SRR954013 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 752457922 bp
SRR954014 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 774835895 bp
SRR954256 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1719358461 bp
SRR954257 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1638229858 bp
SRR954258 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1457364272 bp
SRR954259 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1884338975 bp
SRR954260 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1577903121 bp
SRR954261 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1564043395 bp
SRR954262 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1387061312 bp
SRR954263 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1465579089 bp
SRR954264 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1534260304 bp
SRR954265 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1481933175 bp
SRR954266 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1566171595 bp
SRR954267 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1079988638 bp
SRR954268 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1648626421 bp
SRR954269 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1808320058 bp
SRR954270 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1543108874 bp
SRR954271 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1703094383 bp
SRR954272 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 1717246851 bp
SRR954290 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 602961600 bp
SRR954292 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 636723016 bp
SRR954294 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 700564597 bp
SRR954295 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 603301715 bp
SRR954296 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 628653172 bp
SRR954297 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 700337908 bp
SRR954298 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 389256370 bp
SRR954299 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 169985955 bp
SRR954300 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 662033355 bp
SRR954301 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 398424725 bp
SRR954302 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 363747006 bp
SRR954303 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz ILLUMINA 19728340706 bp
SRR954305 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz ILLUMINA 21446648050 bp
SRR954306 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz ILLUMINA 22210012918 bp
SRR954307 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz ILLUMINA 21076736156 bp
SRR955440 WGS of Amborella trichopoda: cuttings free living autotroph diploid plant with flash frozen leaf from USA: California\, University of California Santa Cruz Arboretum, Amtr_SantaCruz LS454 380003445 bp