Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA827489 Illumina sequencing data for assembly of 'DB02' and 'PN02' Hongkong kumquat -
4
Library Title Platform Total Base VCF File
SRR20281196 WGS of Citrus hindsii: RT treatment young leaves fromChina: Guangdong\, Puning, PN02' Hongkong kumquat, SI-Pool, PN02-Leaf ILLUMINA 36994398938 bp
SRR20281197 WGS of Citrus hindsii: RT treatment young leaves fromChina: Jiangxi\, Dingnan, DB02' Hongkong kumquat, SC-Pool, DB02-Leaf ILLUMINA 34128837540 bp
SRR18778142 WGS of Citrus hindsii: RT treatment young leaves fromChina: Guangdong\, Puning, PN02' Hongkong kumquat, Re_PN02-L, PN02-Leaf ILLUMINA 13072391100 bp
SRR18778143 WGS of Citrus hindsii: RT treatment young leaves fromChina: Jiangxi\, Dingnan, DB02' Hongkong kumquat, Re_DB02-L, DB02-Leaf ILLUMINA 14004977700 bp
PRJNA736109 Resequencing of cultivated kumquats and hongkong kumquats -
15
Library Title Platform Total Base VCF File
SRR14766290 WGS of Citrus hindsii: mature leaf from China, JgA13 ILLUMINA 17277633829 bp
SRR14766291 WGS of Citrus hindsii: mature leaf from China, JgA10 ILLUMINA 12611440404 bp
SRR14766292 WGS of Citrus hindsii: mature leaf from China, JgA06 ILLUMINA 12434700438 bp
SRR14766293 WGS of Citrus hindsii: mature leaf from China, JgA04 ILLUMINA 14084577223 bp
SRR14766294 WGS of Citrus hindsii: mature leaf from China, JgA14 ILLUMINA 14542438116 bp
SRR14766295 WGS of Citrus hindsii: mature leaf from China, JgA09 ILLUMINA 14768172184 bp
SRR14766296 WGS of Citrus hindsii: mature leaf from China, JgA07 ILLUMINA 13084438452 bp
SRR14766307 WGS of Citrus hindsii: mature leaf from China, JgA11 ILLUMINA 17753465411 bp
SRR14766313 WGS of Citrus hindsii: mature leaf from China, JgA17 ILLUMINA 14728307346 bp
SRR14766314 WGS of Citrus hindsii: mature leaf from China, JgA05 ILLUMINA 14232742670 bp
SRR14766315 WGS of Citrus hindsii: mature leaf from China, JgA03 ILLUMINA 15279198274 bp
SRR14766316 WGS of Citrus hindsii: mature leaf from China, JgA18 ILLUMINA 13311221137 bp
SRR14766317 WGS of Citrus hindsii: mature leaf from China, JgA12 ILLUMINA 13900694824 bp
SRR14766318 WGS of Citrus hindsii: mature leaf from China, JgA02 ILLUMINA 15125033399 bp
SRR14766319 WGS of Citrus hindsii: mature leaf from China, JgA01 ILLUMINA 12919263505 bp
PRJNA735863 Citrus hindsii or Fortunella hindsii, also named hongkong kumquat and mini citrus. Wang et al., 2022
64
Library Title Platform Total Base VCF File
SRR14759217 WGS of Citrus hindsii: mature plant with leaves from China:Hubei, sexual reproduction, Mono_offsping_bulk, Mono bulk ILLUMINA 10800000000 bp
SRR14759218 WGS of Citrus hindsii: mature plant with leaves from China:Hubei, apomixis, Poly_offsping_bulk, Poly bulk ILLUMINA 10800000000 bp
SRR14761103 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, FC11, FC11 ILLUMINA 13362157200 bp
SRR14761104 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, FC01, FC01 ILLUMINA 12486876600 bp
SRR14761105 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, DYT01, DYT01 ILLUMINA 12175467300 bp
SRR14761106 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, DYS002-5, DYS002-5 ILLUMINA 11777881200 bp
SRR14761107 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, DR01, DR01 ILLUMINA 12141019800 bp
SRR14761108 WGS of Citrus hindsii: mature plant with leaf from China:Zhejiang, ZX11, ZX11 ILLUMINA 12512992200 bp
SRR14761109 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, ZL01, ZL01 ILLUMINA 11213139000 bp
SRR14761110 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, YSY02, YSY02 ILLUMINA 11390357700 bp
SRR14761111 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, XHS, XHS ILLUMINA 12178742400 bp
SRR14761112 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, WP, WP ILLUMINA 14070222000 bp
SRR14761113 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, WH, WH ILLUMINA 12455004900 bp
SRR14761114 WGS of Citrus hindsii: mature plant with leaf from China:Jiangxi, DB, DB ILLUMINA 14004977700 bp
SRR14761115 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, TZ, TZ ILLUMINA 11171346600 bp
SRR14761116 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, TX01, TX01 ILLUMINA 12385082100 bp
SRR14761117 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, SY02, SY02 ILLUMINA 11346277800 bp
SRR14761118 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, SY01, SY01 ILLUMINA 11837493300 bp
SRR14761119 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, SL01, SL01 ILLUMINA 11532503400 bp
SRR14761120 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, SK03, SK03 ILLUMINA 11938506900 bp
SRR14761121 WGS of Citrus hindsii: mature plant with leaf from China:Zhejiang, SF11, SF11 ILLUMINA 12213251400 bp
SRR14761122 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, SD01, SD01 ILLUMINA 12995630700 bp
SRR14761123 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, RYS, RYS ILLUMINA 11452259400 bp
SRR14761124 WGS of Citrus hindsii: mature plant with leaf from China:Hunan, QK03, QK03 ILLUMINA 11505039600 bp
SRR14761125 WGS of Citrus hindsii: mature plant with leaf from China:Hunan, CZ12, CZ12 ILLUMINA 11461373400 bp
SRR14761126 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, PN, PN ILLUMINA 13072391100 bp
SRR14761127 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, PN03, PN03 ILLUMINA 12319932600 bp
SRR14761128 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, PN01, PN01 ILLUMINA 12185364600 bp
SRR14761129 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, NQ03, NQ03 ILLUMINA 12149199300 bp
SRR14761130 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, MP12, MP12 ILLUMINA 11802920700 bp
SRR14761131 WGS of Citrus hindsii: mature plant with leaf from China:Zhejiang, MJS02, MJS02 ILLUMINA 13099533600 bp
SRR14761132 WGS of Citrus hindsii: mature plant with leaf from China:Zhejiang, LY04, LY04 ILLUMINA 12291918900 bp
SRR14761133 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, LT01, LT01 ILLUMINA 11498613300 bp
SRR14761134 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, LS4, LS4 ILLUMINA 12680125200 bp
SRR14761135 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, LS, LS ILLUMINA 11587101000 bp
SRR14761136 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, CH01, CH01 ILLUMINA 11704109400 bp
SRR14761137 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, LH10, LH10 ILLUMINA 11066963700 bp
SRR14761138 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, JK09, JK09 ILLUMINA 11502858900 bp
SRR14761139 WGS of Citrus hindsii: mature plant with leaf from China:Jiangxi, HS03, HS03 ILLUMINA 12010941300 bp
SRR14761140 WGS of Citrus hindsii: mature plant with leaf from China:Jiangxi, HK02, HK02 ILLUMINA 11992498800 bp
SRR14761141 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, GZ01, GZ01 ILLUMINA 12355329300 bp
SRR14761142 WGS of Citrus hindsii: mature plant with leaf from China:Hunan, GT01, GT01 ILLUMINA 12127867200 bp
SRR14761143 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, GHS01, GHS01 ILLUMINA 12453506400 bp
SRR14761144 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, GH01, GH01 ILLUMINA 12607320900 bp
SRR14761145 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, FC-7, FC-7 ILLUMINA 11912520600 bp
SRR14761146 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, FC14, FC14 ILLUMINA 12070447800 bp
SRR14761147 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, BZ01, BZ01 ILLUMINA 12288920100 bp
SRR14761148 WGS of Citrus hindsii: mature plant with leaf from China:Fujian, BLS07, BLS07 ILLUMINA 11546467800 bp
SRR19016679 WGS of Citrus hindsii: mature plant with leaf from China:Shenzhen, QLS, QLS ILLUMINA 11978425200 bp
SRR22345195 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, NXG-5, SJGW21NXG-5 ILLUMINA 12179650800 bp
SRR22345197 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, NXG-3, SJGW21NXG-3 ILLUMINA 11751026100 bp
SRR22345199 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, NXG-1, SJGW21NXG-1 ILLUMINA 12049327500 bp
SRR22345201 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, LZSZ-1, SJGW21LZSZ-1 ILLUMINA 14922063000 bp
SRR22345205 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, DSD-2, SJGW21DSD-2 ILLUMINA 12540590400 bp
SRR22345206 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, DSD-1, SJGW21DSD-1 ILLUMINA 11981518500 bp
SRR22345194 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, NXG-6, SJGW21NXG-6 ILLUMINA 12263735100 bp
SRR22345196 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, NXG-4, SJGW21NXG-4 ILLUMINA 12166555500 bp
SRR22345198 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, NXG-2, SJGW21NXG-2 ILLUMINA 13202196900 bp
SRR22345200 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, LZSZ-2, SJGW21LZSZ-2 ILLUMINA 14004585300 bp
SRR22345202 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, NXG-9, SJGW21NXG-9 ILLUMINA 12219147300 bp
SRR22345203 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, NXG-8, SJGW21NXG-8 ILLUMINA 11710957500 bp
SRR22345204 WGS of Citrus hindsii: mature plant with leaf from China:Guangdong, NXG-7, SJGW21NXG-7 ILLUMINA 12083254500 bp
SRR14764694 WGS of Citrus hindsii: mature plant with leaf from China:Hubei, Sy3-45_NGS, Sy3-45 ILLUMINA 1.30633E+11 bp
SRR14764695 WGS of Citrus hindsii: mature plant with leaf from China:Hubei, Sy3-45_pacbio, Sy3-45 PACBIO_SMRT 1.36451E+11 bp
PRJNA497956 The transcriptome of different tissues from Fortunella hindsii Zhu et al., 2019
2
Library Title Platform Total Base VCF File
SRR8987947 WGS of Citrus hindsii: mature plant with Seed from China, Hongkong kumquat, SD ILLUMINA 9219576600 bp
SRR8988599 WGS of Citrus hindsii: mature plant with Seed from China, Hongkong kumquat, SD ILLUMINA 9076122900 bp
PRJNA487160 whole genome sequence and denovo genome assembly of Fortunella hindsii Zhu et al., 2019
8
Library Title Platform Total Base VCF File
SRR17015036 WGS of Citrus hindsii: mature leaf from China, 5S ILLUMINA 13100275080 bp
SRR17015037 WGS of Citrus hindsii: mature leaf from China, 4N ILLUMINA 13152281580 bp
SRR17015038 WGS of Citrus hindsii: mature leaf from China, RAJG ILLUMINA 12631610700 bp
SRR17015039 WGS of Citrus hindsii: mature leaf from China, OYX ILLUMINA 12059444100 bp
SRR17015040 WGS of Citrus hindsii: mature leaf from China, NGD ILLUMINA 12373978500 bp
SRR8983184 WGS of Citrus hindsii: mature leaf from China, Hongkong kumquat, NDES00002 ILLUMINA 18823528200 bp
SRR8983314 WGS of Citrus hindsii: mature leaf from China, Hongkong kumquat, NDES00002 ILLUMINA 15580441200 bp
SRR8983320 WGS of Citrus hindsii: mature leaf from China, Hongkong kumquat, NDES00004 ILLUMINA 16847232000 bp

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