Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA993172 In this study, we conducted a comprehensive metabolomic analysis of the flavedo of 300 citrus accessions. -
4
Library Title Platform Total Base VCF File
SRR25399320 WGS of Citrus medica: fruit maturity stage plant with fruit flavedo from China:Sichuan, Yuanxiangyuan, NEW34 BGISEQ 12802815600 bp
SRR25399321 WGS of Citrus medica: fruit maturity stage plant with fruit flavedo from China:Yunnan, Daguoxiangyuan, NEW33 BGISEQ 11834204700 bp
SRR25399322 WGS of Citrus medica: fruit maturity stage plant with fruit flavedo from China:Yunnan, Xiangyuan, NEW32 BGISEQ 12702201600 bp
SRR25399323 WGS of Citrus medica: fruit maturity stage plant with fruit flavedo from China:Sichuan, Mulixiangyuan, NEW30 BGISEQ 12800453100 bp
PRJNA784926 This work sequences a citron accession for comparison with other available sequences. Borredá et al., 2022
1
Library Title Platform Total Base VCF File
SRR17073741 WGS of Citrus medica: adult plant with leaves from Spain: Valencia, Diamante, ivia_1051 ILLUMINA 32178606454 bp
PRJNA670310 gDNA sequencing of Ryukyuan Citrus Wu et al., 2021
2
Library Title Platform Total Base VCF File
SRR14460011 WGS of Citrus medica: leaves from Japan: Okinawa, Bushukan 2, CI1 ILLUMINA 25095028110 bp
SRR14460012 WGS of Citrus medica: leaves from Japan: Okinawa, Bushukan 1, CI0 ILLUMINA 22374973188 bp
PRJNA414519 Through genomic, phylogenetic and biogeographic analyses of 40 accessions, we identified ten natural citrus species and propose that citrus diversified during late Miocene through a rapid Southeast Asian radiation correlating with a dramatic weakening of the monsoons. Wu et al., 2018
4
Library Title Platform Total Base VCF File
SRR6188451 WGS of Citrus medica: adult plant with young leaves from France: SRA\, Corse, Humpang citron, ivia_322 ILLUMINA 21043552406 bp
SRR6188453 WGS of Citrus medica: adult plant with young leaves from France: SRA\, Corse, Buddha''s hand citron, ivia_320 ILLUMINA 18366080162 bp
SRR6188458 WGS of Citrus medica: adult plant with young leaves from France: SRA\, Corse, Corsica citron, ivia_217 ILLUMINA 8962862412 bp
SRR6188459 WGS of Citrus medica: adult plant with young leaves from France: SRA\, Corse, Mac Veu Mountain citron, ivia_317 ILLUMINA 18995127054 bp
PRJNA320023 Citrus medica Genome sequencing Wang et al., 2017
59
Library Title Platform Total Base VCF File
SRR17039796 WGS of Citrus medica: mature plant with leaf from China, s0115 ILLUMINA 18960034200 bp
SRR17039797 WGS of Citrus medica: mature plant with leaf from China, s0152 ILLUMINA 19082166750 bp
SRR17039798 WGS of Citrus medica: mature plant with leaf from China, s0156 ILLUMINA 16598132700 bp
SRR17039799 WGS of Citrus medica: mature plant with leaf from China, RL ILLUMINA 21311404200 bp
SRR17039800 WGS of Citrus medica: mature plant with leaf from China, BSDG ILLUMINA 18129582000 bp
SRR17039801 WGS of Citrus medica: mature plant with leaf from China, s2019-24-L ILLUMINA 15401183700 bp
SRR17039802 WGS of Citrus medica: mature plant with leaf from China, s2019-22-L ILLUMINA 14628603900 bp
SRR17039803 WGS of Citrus medica: mature plant with leaf from China, s2018-129-L ILLUMINA 19020462300 bp
SRR17039804 WGS of Citrus medica: mature plant with leaf from China, s2018-128-L ILLUMINA 19093557600 bp
SRR17039805 WGS of Citrus medica: mature plant with leaf from China, BS ILLUMINA 18658614000 bp
SRR17039806 WGS of Citrus medica: mature plant with leaf from China, s2018-127-L ILLUMINA 16578185100 bp
SRR17039807 WGS of Citrus medica: mature plant with leaf from China, s2018-122-L ILLUMINA 17913319500 bp
SRR17039808 WGS of Citrus medica: mature plant with leaf from China, s2018-121-L ILLUMINA 15138849300 bp
SRR17039809 WGS of Citrus medica: mature plant with leaf from China, s2018-102-L ILLUMINA 16255038000 bp
SRR17039810 WGS of Citrus medica: mature plant with leaf from China, s2018-101-L ILLUMINA 20154036900 bp
SRR17039811 WGS of Citrus medica: mature plant with leaf from China, s2018-96-L ILLUMINA 20340890100 bp
SRR17039812 WGS of Citrus medica: mature plant with leaf from China, s2018-95-L ILLUMINA 19007835000 bp
SRR17039813 WGS of Citrus medica: mature plant with leaf from China, s2018-94-L ILLUMINA 18651482400 bp
SRR17039814 WGS of Citrus medica: mature plant with leaf from China, s2018-93-L ILLUMINA 21742754700 bp
SRR17039815 WGS of Citrus medica: mature plant with leaf from China, s2018-92-L ILLUMINA 17765860200 bp
SRR17039816 WGS of Citrus medica: mature plant with leaf from China, QZXY ILLUMINA 23648097000 bp
SRR17039817 WGS of Citrus medica: mature plant with leaf from China, s2018-90-L ILLUMINA 17546092800 bp
SRR17039818 WGS of Citrus medica: mature plant with leaf from China, s2018-89-L ILLUMINA 19866877200 bp
SRR17039819 WGS of Citrus medica: mature plant with leaf from China, s2018-88-L ILLUMINA 16604928300 bp
SRR17039820 WGS of Citrus medica: mature plant with leaf from China, s2018-87-L ILLUMINA 15985034700 bp
SRR17039821 WGS of Citrus medica: mature plant with leaf from China, s2018-85-L ILLUMINA 16667031600 bp
SRR17039822 WGS of Citrus medica: mature plant with leaf from China, s2018-79-L ILLUMINA 15090743700 bp
SRR17039823 WGS of Citrus medica: mature plant with leaf from China, s2018-78-L ILLUMINA 14988612300 bp
SRR17039824 WGS of Citrus medica: mature plant with leaf from China, s2018-65-L ILLUMINA 18742218000 bp
SRR17039825 WGS of Citrus medica: mature plant with leaf from China, s2018-64-L ILLUMINA 18837531300 bp
SRR17039826 WGS of Citrus medica: mature plant with leaf from China, s2018-62-L ILLUMINA 17844938700 bp
SRR17039827 WGS of Citrus medica: mature plant with leaf from China, s2018-4 ILLUMINA 17178461400 bp
SRR17039828 WGS of Citrus medica: mature plant with leaf from China, s2018-61-L ILLUMINA 14121751500 bp
SRR17039829 WGS of Citrus medica: mature plant with leaf from China, s2018-60-L ILLUMINA 15198222000 bp
SRR17039830 WGS of Citrus medica: mature plant with leaf from China, s2018-59-L ILLUMINA 21202560300 bp
SRR17039831 WGS of Citrus medica: mature plant with leaf from China, s2018-58-L ILLUMINA 14140259400 bp
SRR17039832 WGS of Citrus medica: mature plant with leaf from China, s2018-1-L ILLUMINA 13896714900 bp
SRR17039833 WGS of Citrus medica: mature plant with leaf from China, PCJY ILLUMINA 13443741600 bp
SRR17039834 WGS of Citrus medica: mature plant with leaf from China, RLXY3 ILLUMINA 13059429000 bp
SRR17039835 WGS of Citrus medica: mature plant with leaf from China, RLXY2 ILLUMINA 8862974250 bp
SRR17039836 WGS of Citrus medica: mature plant with leaf from China, s0153 ILLUMINA 17907005400 bp
SRR17039837 WGS of Citrus medica: mature plant with leaf from China, s0133 ILLUMINA 22397109000 bp
SRR17039838 WGS of Citrus medica: mature plant with leaf from China, s2018-3 ILLUMINA 17642162100 bp
SRR17039839 WGS of Citrus medica: mature plant with leaf from China, s2018-2 ILLUMINA 18001725600 bp
SRR3740951 WGS of Citrus medica: mature plant with leaf from China, XZ ILLUMINA 7290527943 bp
SRR3740960 WGS of Citrus medica: mature plant with leaf from China, XZ ILLUMINA 6997842643 bp
SRR3740978 WGS of Citrus medica: mature plant with leaf from China, XZ ILLUMINA 30431585920 bp
SRR3944125 WGS of Citrus medica: mature plant with leaf from China, JY4 ILLUMINA 9962625500 bp
SRR3944139 WGS of Citrus medica: mature plant with leaf from China, JY5 ILLUMINA 9559469750 bp
SRR3944160 WGS of Citrus medica: mature plant with leaf from China, JY8 ILLUMINA 12237127750 bp
SRR3944177 WGS of Citrus medica: mature plant with leaf from China, JY15 ILLUMINA 10460710750 bp
SRR3948093 WGS of Citrus medica: mature plant with leaf from China, JY28 ILLUMINA 10790612750 bp
SRR3948163 WGS of Citrus medica: mature plant with leaf from China, FS ILLUMINA 10865047400 bp
SRR3948493 WGS of Citrus medica: mature plant with leaf from China, 9Y ILLUMINA 13161198780 bp
SRR3938056 WGS of Citrus medica: mature plant with leaf from China, XZ ILLUMINA 12988038600 bp
SRR3938253 WGS of Citrus medica: mature plant with leaf from China, XZ1 ILLUMINA 11039386250 bp
SRR3938734 WGS of Citrus medica: mature plant with leaf from China, JY ILLUMINA 13233009420 bp
SRR4009988 WGS of Citrus medica: mature plant with leaf from China, XZ ILLUMINA 13238459000 bp
SRR4010249 WGS of Citrus medica: mature plant with leaf from China, XZ ILLUMINA 13538656000 bp

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