Omics-Seq

Project

Bioproject

Description

Publication

GVCF File

Library Num.

Whole genome resequencing of the Mediterranean basin fig tree (Ficus carica L.) GeneBank collection provides insights into genome diversity and fruit quality traits.

Library	Title	Platform	Total Base
SRR24041454	WGS of Ficus carica: leaf from Greece, KALAMON 228, F18	ILLUMINA	9569504400 bp
SRR24041455	WGS of Ficus carica: leaf from Greece, GENTILE BIANCO, F17	ILLUMINA	9497010300 bp
SRR24041456	WGS of Ficus carica: leaf from Greece, FRAGUSSANO, F16	ILLUMINA	9261937200 bp
SRR24041457	WGS of Ficus carica: leaf from Greece, Dottato, F15	ILLUMINA	9619831800 bp
SRR24041458	WGS of Ficus carica: leaf from Greece, ASRPA PRODROMOU, F9	ILLUMINA	9306130200 bp
SRR24041459	WGS of Ficus carica: leaf from Greece, ASPRA POLIS, F8	ILLUMINA	8035350600 bp
SRR24041460	WGS of Ficus carica: leaf from Greece, ASPRA KLIROY, F7	ILLUMINA	9686617200 bp
SRR24041461	WGS of Ficus carica: leaf from Greece, BROGIOTTO BLANCO, F14	ILLUMINA	9649001700 bp
SRR24041462	WGS of Ficus carica: leaf from Greece, ANALATA, F6	ILLUMINA	9030682500 bp
SRR24041463	WGS of Ficus carica: leaf from Greece, ZELATA, F55	ILLUMINA	10116967800 bp
SRR24041464	WGS of Ficus carica: leaf from Greece, VERTINO, F54	ILLUMINA	9883014600 bp
SRR24041465	WGS of Ficus carica: leaf from Greece, VERDONNE, F53	ILLUMINA	10616866800 bp
SRR24041466	WGS of Ficus carica: leaf from Greece, VASILIKATO, F52	ILLUMINA	9190415700 bp
SRR24041467	WGS of Ficus carica: leaf from Greece, VASILIKA MELISSI, F51	ILLUMINA	9770568600 bp
SRR24041468	WGS of Ficus carica: leaf from Greece, VASILIKA MAVRA, F50	ILLUMINA	10123680600 bp
SRR24041469	WGS of Ficus carica: leaf from Greece, AIDINIA, F5	ILLUMINA	9325171500 bp
SRR24041470	WGS of Ficus carica: leaf from Greece, VARDIKA, F49	ILLUMINA	10307772300 bp
SRR24041471	WGS of Ficus carica: leaf from Greece, VALOSYKIA, F48	ILLUMINA	9839522700 bp
SRR24041472	WGS of Ficus carica: leaf from Greece, BROGGIOTO, F13	ILLUMINA	10424294100 bp
SRR24041473	WGS of Ficus carica: leaf from Greece, TURCA NERO, F47	ILLUMINA	10151378700 bp
SRR24041474	WGS of Ficus carica: leaf from Greece, TROIANA, F46	ILLUMINA	9452614200 bp
SRR24041475	WGS of Ficus carica: leaf from Greece, TAURO, F44	ILLUMINA	9727426500 bp
SRR24041476	WGS of Ficus carica: leaf from Greece, SYROS MARONIA, F43	ILLUMINA	10067755200 bp
SRR24041477	WGS of Ficus carica: leaf from Greece, SYROS LOYMPARD, F42	ILLUMINA	10501481400 bp
SRR24041478	WGS of Ficus carica: leaf from Greece, SYKIA DRAMA, F41	ILLUMINA	11209331100 bp
SRR24041479	WGS of Ficus carica: leaf from Greece, SMYRNAIKI, F40	ILLUMINA	9955415700 bp
SRR24041480	WGS of Ficus carica: leaf from Greece, AGRIOSYKIA SAMPAZIOTI, F4	ILLUMINA	8192797500 bp
SRR24041481	WGS of Ficus carica: leaf from Greece, SMIRNA, F39	ILLUMINA	9331194300 bp
SRR24041482	WGS of Ficus carica: leaf from Greece, SK-4-KANALAKIA, F38	ILLUMINA	9547858500 bp
SRR24041483	WGS of Ficus carica: leaf from Greece, BLACK MISSION, F12	ILLUMINA	9543023100 bp
SRR24041484	WGS of Ficus carica: leaf from Greece, ROSCE SIGNORA, F37	ILLUMINA	9712639800 bp
SRR24041485	WGS of Ficus carica: leaf from Greece, PSOMA, F36	ILLUMINA	9821063700 bp
SRR24041486	WGS of Ficus carica: leaf from Greece, PERKOULIA MYTILINIS, F35	ILLUMINA	10798132500 bp
SRR24041487	WGS of Ficus carica: leaf from Greece, PERDIKOSYKA, F34	ILLUMINA	10571303400 bp
SRR24041488	WGS of Ficus carica: leaf from Greece, PALAZZO, F33	ILLUMINA	9836976900 bp
SRR24041489	WGS of Ficus carica: leaf from Greece, OPSIMA XOIROKITIAS, F32	ILLUMINA	9434898900 bp
SRR24041490	WGS of Ficus carica: leaf from Greece, NAPOLITANA NEGRA, F31	ILLUMINA	9993579000 bp
SRR24041491	WGS of Ficus carica: leaf from Greece, AGRIOSYKIA LYKOTRAFOY, F3	ILLUMINA	9234648300 bp
SRR24041492	WGS of Ficus carica: leaf from Greece, MISSION, F29	ILLUMINA	10720884900 bp
SRR24041493	WGS of Ficus carica: leaf from Greece, MELOGRANO, F28	ILLUMINA	9975078000 bp
SRR24041494	WGS of Ficus carica: leaf from Greece, BAZANATA, F11	ILLUMINA	9798889500 bp
SRR24041495	WGS of Ficus carica: leaf from Greece, MAVROSYKIA IMVROU, F27	ILLUMINA	9993468600 bp
SRR24041496	WGS of Ficus carica: leaf from Greece, ACLILIAS, F26	ILLUMINA	10268458800 bp
SRR24041497	WGS of Ficus carica: leaf from Greece, MAVROKOTSANATA ISTIEAS, F25	ILLUMINA	9648136800 bp
SRR24041498	WGS of Ficus carica: leaf from Greece, MAVRA SKOPELOY, F24	ILLUMINA	10787258400 bp
SRR24041499	WGS of Ficus carica: leaf from Greece, MAVRA KLIROY, F23	ILLUMINA	9387950400 bp
SRR24041500	WGS of Ficus carica: leaf from Greece, LURI CROSSA, F22	ILLUMINA	9531122700 bp
SRR24041501	WGS of Ficus carica: leaf from Greece, LIVANO, F21	ILLUMINA	7905386400 bp
SRR24041502	WGS of Ficus carica: leaf from Greece, LESVOY PRASINOSYKIA, F20	ILLUMINA	9322104900 bp
SRR24041503	WGS of Ficus carica: leaf from Greece, AGRIOSYKIA FILIA, F2	ILLUMINA	10174237500 bp
SRR24041504	WGS of Ficus carica: leaf from Greece, KYMIS SYLOGI 1, F19	ILLUMINA	9897891000 bp
SRR24041505	WGS of Ficus carica: leaf from Greece, KASTANOSYKA ARNAS GYTHIOY, F10	ILLUMINA	10215134400 bp
SRR24041506	WGS of Ficus carica: leaf from Greece, AGRIA TAXIARCHI, F1	ILLUMINA	9964176300 bp

PRJNA684963

Researchers used the de novo sequenced genome of Ficus microcarpa as reference and conduct whole genome sequencing of 17 Moraceae species to investigate the ancient hybridization in different taxonomic level based on phylogenetic network analysis, D-statistics and Cyto-nuclear phylogenetic conflict analysis.

Wang et al., 2021

Library	Title	Platform	Total Base	VCF File
SRR13279563	WGS of Ficus carica: frequent ancient hybridization promotes diversification of extreme obligate insect pollinated figs mature plant with leaf from China,W20_1	ILLUMINA	3206989200 bp
SRR13279566	WGS of Ficus carica: adult tree dried fresh leaf from China, WG116_1	ILLUMINA	4073480100 bp

PRJNA565858

Researchers produced a high-quality genome reference sequence of one of the oldest known domesticated species, fig (Ficus carica L.), using single-molecule, real-time sequencing.

Usai et al., 2020

Library	Title	Platform	Total Base
SRR10127734	WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_06	ILLUMINA	3521442682 bp
SRR10127735	WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_05	ILLUMINA	3560486260 bp
SRR10127736	WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_04	ILLUMINA	4279424630 bp
SRR10127737	WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_03	ILLUMINA	5252878167 bp
SRR10127738	WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_02	ILLUMINA	4931785226 bp
SRR10127739	WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_01	ILLUMINA	5022549436 bp

PRJNA389699

Ficus carica gDNA-seq dataset for genome assembly and gene prediction.

Library	Title	Platform	Total Base	VCF File
SRR5678803	WGS of Ficus carica: 3 years plant with young fruits sub_epidermis tissue from Italy: Pisa, Dottato, F_carica_dot	ILLUMINA	15073339221 bp
SRR5678804	WGS of Ficus carica: 3 years plant with young fruits sub_epidermis tissue from Italy: Pisa, Dottato, F_carica_dot	ILLUMINA	6844107000 bp

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