Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
Others

Project

Bioproject Description Publication GVCF File Library Num.
PRJNA951283 Whole genome resequencing of the Mediterranean basin fig tree (Ficus carica L.) GeneBank collection provides insights into genome diversity and fruit quality traits. -
53
Library Title Platform Total Base VCF File
SRR24041454 WGS of Ficus carica: leaf from Greece, KALAMON 228, F18 ILLUMINA 9569504400 bp
SRR24041455 WGS of Ficus carica: leaf from Greece, GENTILE BIANCO, F17 ILLUMINA 9497010300 bp
SRR24041456 WGS of Ficus carica: leaf from Greece, FRAGUSSANO, F16 ILLUMINA 9261937200 bp
SRR24041457 WGS of Ficus carica: leaf from Greece, Dottato, F15 ILLUMINA 9619831800 bp
SRR24041458 WGS of Ficus carica: leaf from Greece, ASRPA PRODROMOU, F9 ILLUMINA 9306130200 bp
SRR24041459 WGS of Ficus carica: leaf from Greece, ASPRA POLIS, F8 ILLUMINA 8035350600 bp
SRR24041460 WGS of Ficus carica: leaf from Greece, ASPRA KLIROY, F7 ILLUMINA 9686617200 bp
SRR24041461 WGS of Ficus carica: leaf from Greece, BROGIOTTO BLANCO, F14 ILLUMINA 9649001700 bp
SRR24041462 WGS of Ficus carica: leaf from Greece, ANALATA, F6 ILLUMINA 9030682500 bp
SRR24041463 WGS of Ficus carica: leaf from Greece, ZELATA, F55 ILLUMINA 10116967800 bp
SRR24041464 WGS of Ficus carica: leaf from Greece, VERTINO, F54 ILLUMINA 9883014600 bp
SRR24041465 WGS of Ficus carica: leaf from Greece, VERDONNE, F53 ILLUMINA 10616866800 bp
SRR24041466 WGS of Ficus carica: leaf from Greece, VASILIKATO, F52 ILLUMINA 9190415700 bp
SRR24041467 WGS of Ficus carica: leaf from Greece, VASILIKA MELISSI, F51 ILLUMINA 9770568600 bp
SRR24041468 WGS of Ficus carica: leaf from Greece, VASILIKA MAVRA, F50 ILLUMINA 10123680600 bp
SRR24041469 WGS of Ficus carica: leaf from Greece, AIDINIA, F5 ILLUMINA 9325171500 bp
SRR24041470 WGS of Ficus carica: leaf from Greece, VARDIKA, F49 ILLUMINA 10307772300 bp
SRR24041471 WGS of Ficus carica: leaf from Greece, VALOSYKIA, F48 ILLUMINA 9839522700 bp
SRR24041472 WGS of Ficus carica: leaf from Greece, BROGGIOTO, F13 ILLUMINA 10424294100 bp
SRR24041473 WGS of Ficus carica: leaf from Greece, TURCA NERO, F47 ILLUMINA 10151378700 bp
SRR24041474 WGS of Ficus carica: leaf from Greece, TROIANA, F46 ILLUMINA 9452614200 bp
SRR24041475 WGS of Ficus carica: leaf from Greece, TAURO, F44 ILLUMINA 9727426500 bp
SRR24041476 WGS of Ficus carica: leaf from Greece, SYROS MARONIA, F43 ILLUMINA 10067755200 bp
SRR24041477 WGS of Ficus carica: leaf from Greece, SYROS LOYMPARD, F42 ILLUMINA 10501481400 bp
SRR24041478 WGS of Ficus carica: leaf from Greece, SYKIA DRAMA, F41 ILLUMINA 11209331100 bp
SRR24041479 WGS of Ficus carica: leaf from Greece, SMYRNAIKI, F40 ILLUMINA 9955415700 bp
SRR24041480 WGS of Ficus carica: leaf from Greece, AGRIOSYKIA SAMPAZIOTI, F4 ILLUMINA 8192797500 bp
SRR24041481 WGS of Ficus carica: leaf from Greece, SMIRNA, F39 ILLUMINA 9331194300 bp
SRR24041482 WGS of Ficus carica: leaf from Greece, SK-4-KANALAKIA, F38 ILLUMINA 9547858500 bp
SRR24041483 WGS of Ficus carica: leaf from Greece, BLACK MISSION, F12 ILLUMINA 9543023100 bp
SRR24041484 WGS of Ficus carica: leaf from Greece, ROSCE SIGNORA, F37 ILLUMINA 9712639800 bp
SRR24041485 WGS of Ficus carica: leaf from Greece, PSOMA, F36 ILLUMINA 9821063700 bp
SRR24041486 WGS of Ficus carica: leaf from Greece, PERKOULIA MYTILINIS, F35 ILLUMINA 10798132500 bp
SRR24041487 WGS of Ficus carica: leaf from Greece, PERDIKOSYKA, F34 ILLUMINA 10571303400 bp
SRR24041488 WGS of Ficus carica: leaf from Greece, PALAZZO, F33 ILLUMINA 9836976900 bp
SRR24041489 WGS of Ficus carica: leaf from Greece, OPSIMA XOIROKITIAS, F32 ILLUMINA 9434898900 bp
SRR24041490 WGS of Ficus carica: leaf from Greece, NAPOLITANA NEGRA, F31 ILLUMINA 9993579000 bp
SRR24041491 WGS of Ficus carica: leaf from Greece, AGRIOSYKIA LYKOTRAFOY, F3 ILLUMINA 9234648300 bp
SRR24041492 WGS of Ficus carica: leaf from Greece, MISSION, F29 ILLUMINA 10720884900 bp
SRR24041493 WGS of Ficus carica: leaf from Greece, MELOGRANO, F28 ILLUMINA 9975078000 bp
SRR24041494 WGS of Ficus carica: leaf from Greece, BAZANATA, F11 ILLUMINA 9798889500 bp
SRR24041495 WGS of Ficus carica: leaf from Greece, MAVROSYKIA IMVROU, F27 ILLUMINA 9993468600 bp
SRR24041496 WGS of Ficus carica: leaf from Greece, ACLILIAS, F26 ILLUMINA 10268458800 bp
SRR24041497 WGS of Ficus carica: leaf from Greece, MAVROKOTSANATA ISTIEAS, F25 ILLUMINA 9648136800 bp
SRR24041498 WGS of Ficus carica: leaf from Greece, MAVRA SKOPELOY, F24 ILLUMINA 10787258400 bp
SRR24041499 WGS of Ficus carica: leaf from Greece, MAVRA KLIROY, F23 ILLUMINA 9387950400 bp
SRR24041500 WGS of Ficus carica: leaf from Greece, LURI CROSSA, F22 ILLUMINA 9531122700 bp
SRR24041501 WGS of Ficus carica: leaf from Greece, LIVANO, F21 ILLUMINA 7905386400 bp
SRR24041502 WGS of Ficus carica: leaf from Greece, LESVOY PRASINOSYKIA, F20 ILLUMINA 9322104900 bp
SRR24041503 WGS of Ficus carica: leaf from Greece, AGRIOSYKIA FILIA, F2 ILLUMINA 10174237500 bp
SRR24041504 WGS of Ficus carica: leaf from Greece, KYMIS SYLOGI 1, F19 ILLUMINA 9897891000 bp
SRR24041505 WGS of Ficus carica: leaf from Greece, KASTANOSYKA ARNAS GYTHIOY, F10 ILLUMINA 10215134400 bp
SRR24041506 WGS of Ficus carica: leaf from Greece, AGRIA TAXIARCHI, F1 ILLUMINA 9964176300 bp
PRJNA684963 Researchers used the de novo sequenced genome of Ficus microcarpa as reference and conduct whole genome sequencing of 17 Moraceae species to investigate the ancient hybridization in different taxonomic level based on phylogenetic network analysis, D-statistics and Cyto-nuclear phylogenetic conflict analysis. Wang et al., 2021
2
Library Title Platform Total Base VCF File
SRR13279563 WGS of Ficus carica: frequent ancient hybridization promotes diversification of extreme obligate insect pollinated figs mature plant with leaf from China,W20_1 ILLUMINA 3206989200 bp
SRR13279566 WGS of Ficus carica: adult tree dried fresh leaf from China, WG116_1 ILLUMINA 4073480100 bp
PRJNA565858 Researchers produced a high-quality genome reference sequence of one of the oldest known domesticated species, fig (Ficus carica L.), using single-molecule, real-time sequencing. Usai et al., 2020
6
Library Title Platform Total Base VCF File
SRR10127734 WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_06 ILLUMINA 3521442682 bp
SRR10127735 WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_05 ILLUMINA 3560486260 bp
SRR10127736 WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_04 ILLUMINA 4279424630 bp
SRR10127737 WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_03 ILLUMINA 5252878167 bp
SRR10127738 WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_02 ILLUMINA 4931785226 bp
SRR10127739 WGS of Ficus carica: vegetative stage single female plant with young leaves from Italy:Pisa, Dottato, Fig_01 ILLUMINA 5022549436 bp
PRJNA389699 Ficus carica gDNA-seq dataset for genome assembly and gene prediction. -
2
Library Title Platform Total Base VCF File
SRR5678803 WGS of Ficus carica: 3 years plant with young fruits sub_epidermis tissue from Italy: Pisa, Dottato, F_carica_dot ILLUMINA 15073339221 bp
SRR5678804 WGS of Ficus carica: 3 years plant with young fruits sub_epidermis tissue from Italy: Pisa, Dottato, F_carica_dot ILLUMINA 6844107000 bp

Copyright @Guo Lab京ICP备2022028499号-4