Project

Bioproject Description Publication GVCF File Library Num.
PRJNA1032043 Genome Sequence Assembly of Coffea arabica variety Geisha (UCDv1.0) -
Library Title Platform Total Base VCF File
SRR26586524 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_079 PACBIO_SMRT 1207396940 bp
SRR26586525 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_078 PACBIO_SMRT 1298649336 bp
SRR26586526 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_077 PACBIO_SMRT 1191168456 bp
SRR26586527 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_076 PACBIO_SMRT 1297080305 bp
SRR26586528 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_075 PACBIO_SMRT 1229054691 bp
SRR26586529 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_074 PACBIO_SMRT 2555833973 bp
SRR26586530 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_073 PACBIO_SMRT 2339942328 bp
SRR26586531 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_072 PACBIO_SMRT 2607291162 bp
SRR26586532 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_071 PACBIO_SMRT 2375071525 bp
SRR26586533 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_070 PACBIO_SMRT 2344231623 bp
SRR26586535 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_069 PACBIO_SMRT 2474424012 bp
SRR26586536 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_068 PACBIO_SMRT 2645751487 bp
SRR26586537 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_067 PACBIO_SMRT 2783038413 bp
SRR26586538 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_066 PACBIO_SMRT 2744841022 bp
SRR26586539 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_065 PACBIO_SMRT 2753994371 bp
SRR26586540 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_064 PACBIO_SMRT 3599001440 bp
SRR26586541 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_063 PACBIO_SMRT 2093624743 bp
SRR26586542 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_062 PACBIO_SMRT 2298774044 bp
SRR26586543 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_061 PACBIO_SMRT 2322713754 bp
SRR26586544 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_060 PACBIO_SMRT 2481294077 bp
SRR26586546 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_059 PACBIO_SMRT 2226236072 bp
SRR26586547 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_058 PACBIO_SMRT 2548188097 bp
SRR26586548 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_057 PACBIO_SMRT 2524024170 bp
SRR26586549 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_056 PACBIO_SMRT 2590185118 bp
SRR26586550 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_055 PACBIO_SMRT 2458541189 bp
SRR26586551 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_054 PACBIO_SMRT 2571136681 bp
SRR26586552 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_053 PACBIO_SMRT 3070537034 bp
SRR26586553 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_052 PACBIO_SMRT 3028801414 bp
SRR26586554 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_051 PACBIO_SMRT 2943826114 bp
SRR26586555 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_050 PACBIO_SMRT 3078955614 bp
SRR26586557 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_049 PACBIO_SMRT 2263101089 bp
SRR26586558 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_048 PACBIO_SMRT 3269858758 bp
SRR26586559 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_047 PACBIO_SMRT 2262452821 bp
SRR26586560 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_046 PACBIO_SMRT 376125097 bp
SRR26586561 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_045 PACBIO_SMRT 1456977867 bp
SRR26586562 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_044 PACBIO_SMRT 1817878638 bp
SRR26586563 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_043 PACBIO_SMRT 1587394905 bp
SRR26586564 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_042 PACBIO_SMRT 1884226948 bp
SRR26586565 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_041 PACBIO_SMRT 1631855588 bp
SRR26586566 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_040 PACBIO_SMRT 1539282861 bp
SRR26586568 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_039 PACBIO_SMRT 2112278500 bp
SRR26586569 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_038 PACBIO_SMRT 2315626591 bp
SRR26586570 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_037 PACBIO_SMRT 2366502992 bp
SRR26586571 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_036 PACBIO_SMRT 2079937519 bp
SRR26586572 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_035 PACBIO_SMRT 2214366671 bp
SRR26586573 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_034 PACBIO_SMRT 2220371182 bp
SRR26586574 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_033 PACBIO_SMRT 2331515127 bp
SRR26586575 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_032 PACBIO_SMRT 2392684694 bp
SRR26586576 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_031 PACBIO_SMRT 1028267099 bp
SRR26586577 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_011 PACBIO_SMRT 759340037 bp
SRR26586578 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_010 PACBIO_SMRT 561526596 bp
SRR26586580 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_009 PACBIO_SMRT 551327473 bp
SRR26586581 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_008 PACBIO_SMRT 504862300 bp
SRR26586582 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_007 PACBIO_SMRT 909946371 bp
SRR26586583 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_006 PACBIO_SMRT 1114819456 bp
SRR26586584 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_005 PACBIO_SMRT 1163731436 bp
SRR26586585 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_004 PACBIO_SMRT 1558518577 bp
SRR26586586 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_003 PACBIO_SMRT 1488118589 bp
SRR26586587 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_002 PACBIO_SMRT 864424503 bp
SRR26586588 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_001 PACBIO_SMRT 638959140 bp
SRR26586589 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Nanopore_run2 OXFORD_NANOPORE 62862491213 bp
SRR26586591 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Nanopore_run1 OXFORD_NANOPORE 86501605096 bp
SRR26586598 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_101 PACBIO_SMRT 3417801599 bp
SRR26586599 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_100 PACBIO_SMRT 3701853280 bp
SRR26586601 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_099 PACBIO_SMRT 3960509732 bp
SRR26586602 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_098 PACBIO_SMRT 3811272400 bp
SRR26586603 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_097 PACBIO_SMRT 3974990306 bp
SRR26586604 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_096 PACBIO_SMRT 4232284090 bp
SRR26586605 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_095 PACBIO_SMRT 4199458259 bp
SRR26586606 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_094 PACBIO_SMRT 4214457517 bp
SRR26586607 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_093 PACBIO_SMRT 4255228360 bp
SRR26586608 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_092 PACBIO_SMRT 2780646808 bp
SRR26586609 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_091 PACBIO_SMRT 3038322612 bp
SRR26586610 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_090 PACBIO_SMRT 2100414353 bp
SRR26586612 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_089 PACBIO_SMRT 2564810016 bp
SRR26586613 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_088 PACBIO_SMRT 2267790886 bp
SRR26586614 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_087 PACBIO_SMRT 2741896249 bp
SRR26586615 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_086 PACBIO_SMRT 2483946682 bp
SRR26586616 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_085 PACBIO_SMRT 2301503361 bp
SRR26586617 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_084 PACBIO_SMRT 2998170490 bp
SRR26586618 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_083 PACBIO_SMRT 3120953894 bp
SRR26586619 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_082 PACBIO_SMRT 3192703947 bp
SRR26586620 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_081 PACBIO_SMRT 2357805123 bp
SRR26586621 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_080 PACBIO_SMRT 1414961021 bp
SRR26586622 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_030 PACBIO_SMRT 1119880138 bp
SRR26586624 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_029 PACBIO_SMRT 1084788882 bp
SRR26586625 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_028 PACBIO_SMRT 1032705070 bp
SRR26586626 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_027 PACBIO_SMRT 1025959889 bp
SRR26586627 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_026 PACBIO_SMRT 970278770 bp
SRR26586628 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_025 PACBIO_SMRT 1419510656 bp
SRR26586629 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_024 PACBIO_SMRT 1579628647 bp
SRR26586630 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_023 PACBIO_SMRT 1594042506 bp
SRR26586631 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_022 PACBIO_SMRT 1392100371 bp
SRR26586632 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_021 PACBIO_SMRT 1607881965 bp
SRR26586633 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_020 PACBIO_SMRT 1561719980 bp
SRR26586635 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_019 PACBIO_SMRT 1646965879 bp
SRR26586636 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_018 PACBIO_SMRT 1328428690 bp
SRR26586637 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_017 PACBIO_SMRT 2109217902 bp
SRR26586638 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_016 PACBIO_SMRT 2103571017 bp
SRR26586639 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_015 PACBIO_SMRT 2057058924 bp
SRR26586640 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_014 PACBIO_SMRT 717266323 bp
SRR26586641 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_013 PACBIO_SMRT 686056586 bp
SRR26586642 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Pacbio_cell_012 PACBIO_SMRT 777743908 bp
SRR27860824 WGS of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, Illumina_DNA ILLUMINA 44841799800 bp
PRJNA1001614 Genome sequencing of Coffea arabica samples Scalabrin et al., 2024
Library Title Platform Total Base VCF File
SRR25824382 WGS of Coffea arabica: leaves, SL28, Kenya-SL28 ILLUMINA 76908005700 bp
SRR25824383 WGS of Coffea arabica: leaves, geisha, 1-Geisha ILLUMINA 82237049700 bp
PRJNA1001613 Genome sequencing of Coffea arabica samples Scalabrin et al., 2024
Library Title Platform Total Base VCF File
SRR25824384 WGS of Coffea arabica: leaves, geisha, GEISHA ILLUMINA 60672367200 bp
SRR25824385 WGS of Coffea arabica: leaves, ET47, ET47 ILLUMINA 65757623400 bp