Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
Others

Project

Bioproject Description Publication GVCF File Library Num.
PRJNA648176 Poncirus trifoliata re-sequencing data, the goal of this study was to provide a chromosome-scale genome assembly of Poncirus trifoliata, a close relative of Citrus species. Peng et al., 2020
10
Library Title Platform Total Base VCF File
SRR12323696 WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, US-942, S30_HVMJJCCXX_L4_1, US-942 ILLUMINA 14385817200 bp
SRR12323697 WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, US-812, Q_L3_1, US-812 ILLUMINA 13596337000 bp
SRR12323698 WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, US802, S29_HNH2CCCXX_L5_1, US802 ILLUMINA 10046205300 bp
SRR12323699 WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, US-897, P_L3_1, US-897 ILLUMINA 10930102750 bp
SRR12323700 WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, Carrizo citrange, K_L3_1, Carrizo citrange ILLUMINA 10124101000 bp
SRR12323702 WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, RUBIDOUX, J_L6_1, Rubidoux ILLUMINA 11052680250 bp
SRR12323703 WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, Flying Dragon, I_L6_1, Flying dragon ILLUMINA 10810597500 bp
SRR12323704 WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, Xcitroncirus X639, S19_HVMJJCCXX_L4_1, Xcitroncirus X639 ILLUMINA 14782807800 bp
SRR12323705 WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, Little leaf, S20_HNH2CCCXX_L4_1, Little leaf ILLUMINA 10623287400 bp
SRR12323706 WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, DPI-50-7, H_L5_1, DPI 50-7 ILLUMINA 21200512000 bp
PRJNA554539 Citrus trifoliata cultivar:ZK8 Genome sequencing and assembly. Huang et al., 2021
13
Library Title Platform Total Base VCF File
SRR22198149 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, Yongshun, YSZC ILLUMINA 15293159421 bp
SRR14746355 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK7, ZK7 ILLUMINA 15612057300 bp
SRR14739657 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK8, ZK8 ILLUMINA 14599925700 bp
SRR17013317 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK9, ZK9 ILLUMINA 15608184000 bp
SRR17013313 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK34, ZK34 ILLUMINA 20324268600 bp
SRR17013312 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK35, ZK35 ILLUMINA 16500258000 bp
SRR17013314 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK32, ZK32 ILLUMINA 18745041000 bp
SRR17013310 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK41, ZK41 ILLUMINA 18269306400 bp
SRR17013316 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK17, ZK17 ILLUMINA 18059370300 bp
SRR17013315 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK23, ZK23 ILLUMINA 16281063300 bp
SRR17013318 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK1, ZK1 ILLUMINA 16384485000 bp
SRR17013311 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK40, ZK40 ILLUMINA 17121585300 bp
SRR17013319 WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK, ZK-1 ILLUMINA 13392760400 bp
PRJNA414519 Citrus origin and Evolution. Wu et al., 2018
1
Library Title Platform Total Base VCF File
SRR6188465 WGS of Poncirus trifoliata: adult plant with young leaves from France: SRA\, Corse, Citrus trifoliata,trifoliate orange, ivia_020, PON ILLUMINA 61311401800 bp
PRJNA357637 30 species of Citrus and near relatives Raw sequence reads. -
2
Library Title Platform Total Base VCF File
SRR5128229 WGS of Poncirus trifoliata: mature plant with leaf, Citrus trifoliata, Pomeroy trifoliate, UCR_GPE7_Pomeroy_trifoliate, Roose_GS7 ILLUMINA 7200481799 bp
SRR5128234 WGS of Poncirus trifoliata: mature plant with leaf from Japan, Citrus trifoliata, Flying dragon trifoliate, UCR_GPE14_Flying_dragon_trifoliate, Roose_GS14 ILLUMINA 13049319584 bp
PRJNA313493 Identifying the genome-wide genetic variation between precocious trifoliate orange and its wild type and developing new markers for genetics research. Zhang et al., 2016
1
Library Title Platform Total Base VCF File
SRR3195524 WGS of Poncirus trifoliata: adult plant with leaf from China, trifoliate orange, Citrus trifoliata, citrus ILLUMINA 18000000360 bp

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