| Bioproject |
Description |
Publication |
GVCF File |
Library Num. |
| PRJNA648176 |
Poncirus trifoliata re-sequencing data, the goal of this study was to provide a chromosome-scale genome assembly of Poncirus trifoliata, a close relative of Citrus species. |
Peng et al., 2020 |
 |
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR12323696 |
WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, US-942, S30_HVMJJCCXX_L4_1, US-942 |
ILLUMINA |
14385817200 bp |
|
| SRR12323697 |
WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, US-812, Q_L3_1, US-812 |
ILLUMINA |
13596337000 bp |
|
| SRR12323698 |
WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, US802, S29_HNH2CCCXX_L5_1, US802 |
ILLUMINA |
10046205300 bp |
|
| SRR12323699 |
WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, US-897, P_L3_1, US-897 |
ILLUMINA |
10930102750 bp |
|
| SRR12323700 |
WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, Carrizo citrange, K_L3_1, Carrizo citrange |
ILLUMINA |
10124101000 bp |
|
| SRR12323702 |
WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, RUBIDOUX, J_L6_1, Rubidoux |
ILLUMINA |
11052680250 bp |
|
| SRR12323703 |
WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, Flying Dragon, I_L6_1, Flying dragon |
ILLUMINA |
10810597500 bp |
|
| SRR12323704 |
WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, Xcitroncirus X639, S19_HVMJJCCXX_L4_1, Xcitroncirus X639 |
ILLUMINA |
14782807800 bp |
|
| SRR12323705 |
WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, Little leaf, S20_HNH2CCCXX_L4_1, Little leaf |
ILLUMINA |
10623287400 bp |
|
| SRR12323706 |
WGS of Poncirus trifoliata: young leaf from USA: Florida, Citrus trifoliata, DPI-50-7, H_L5_1, DPI 50-7 |
ILLUMINA |
21200512000 bp |
|
|
| PRJNA554539 |
Citrus trifoliata cultivar:ZK8 Genome sequencing and assembly. |
Huang et al., 2021 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR22198149 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, Yongshun, YSZC |
ILLUMINA |
15293159421 bp |
|
| SRR14746355 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK7, ZK7 |
ILLUMINA |
15612057300 bp |
|
| SRR14739657 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK8, ZK8 |
ILLUMINA |
14599925700 bp |
|
| SRR17013317 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK9, ZK9 |
ILLUMINA |
15608184000 bp |
|
| SRR17013313 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK34, ZK34 |
ILLUMINA |
20324268600 bp |
|
| SRR17013312 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK35, ZK35 |
ILLUMINA |
16500258000 bp |
|
| SRR17013314 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK32, ZK32 |
ILLUMINA |
18745041000 bp |
|
| SRR17013310 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK41, ZK41 |
ILLUMINA |
18269306400 bp |
|
| SRR17013316 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK17, ZK17 |
ILLUMINA |
18059370300 bp |
|
| SRR17013315 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK23, ZK23 |
ILLUMINA |
16281063300 bp |
|
| SRR17013318 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK1, ZK1 |
ILLUMINA |
16384485000 bp |
|
| SRR17013311 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK40, ZK40 |
ILLUMINA |
17121585300 bp |
|
| SRR17013319 |
WGS of Poncirus trifoliata: mature plant with leaf from China, Citrus trifoliata, ZK, ZK-1 |
ILLUMINA |
13392760400 bp |
|
|
| PRJNA414519 |
Citrus origin and Evolution. |
Wu et al., 2018 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR6188465 |
WGS of Poncirus trifoliata: adult plant with young leaves from France: SRA\, Corse, Citrus trifoliata,trifoliate orange, ivia_020, PON |
ILLUMINA |
61311401800 bp |
|
|
| PRJNA357637 |
30 species of Citrus and near relatives Raw sequence reads. |
- |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR5128229 |
WGS of Poncirus trifoliata: mature plant with leaf, Citrus trifoliata, Pomeroy trifoliate, UCR_GPE7_Pomeroy_trifoliate, Roose_GS7 |
ILLUMINA |
7200481799 bp |
|
| SRR5128234 |
WGS of Poncirus trifoliata: mature plant with leaf from Japan, Citrus trifoliata, Flying dragon trifoliate, UCR_GPE14_Flying_dragon_trifoliate, Roose_GS14 |
ILLUMINA |
13049319584 bp |
|
|
| PRJNA313493 |
Identifying the genome-wide genetic variation between precocious trifoliate orange and its wild type and developing new markers for genetics research. |
Zhang et al., 2016 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR3195524 |
WGS of Poncirus trifoliata: adult plant with leaf from China, trifoliate orange, Citrus trifoliata, citrus |
ILLUMINA |
18000000360 bp |
|
|
Species Info.
Omics Data
Seq. Analysis
Project
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