Omics-Seq

Project

Bioproject

Description

Publication

GVCF File

Library Num.

This project aims to characterize and study the horizontal transfer between non-model species in a natural ecosystem: the Massane forest located in southern France.

Aubin et al., 2021

Library	Title	Platform	Total Base	VCF File
SRR17214825	WGS of Prunus avium: wild adult plant with leaf from France: Massane reservation, Wild cherry	ILLUMINA	13016928000 bp

PRJNA761776

The impact of gamma irradiation at the chromosomal level was assessed in four F1s derived from gamma irradiated sweet cherry parent plants.

McCord et al., 2022

Library	Title	Platform	Total Base
SRR15825582	WGS of Prunus avium: mature sweet medium size\, medium texture fruit phenotype plant with leaf from USA: Washington State, Irradiated_Cherry_F1_3-14	OXFORD_NANOPORE	2563398969 bp
SRR15825583	WGS of Prunus avium: mature sweet\, small\, soft fruit phenotype plant with leaf from USA: Washington State, Irradiated_Cherry_F1_3-1	OXFORD_NANOPORE	3362441292 bp
SRR15825584	WGS of Prunus avium: mature balanced flavor\, small\, crunchy texture fruit phenotype plant with leaf from USA: Washington State, Irradiated_Cherry_F1_2-2	OXFORD_NANOPORE	918137204 bp
SRR15825585	WGS of Prunus avium: mature bitter/acidic\, medium-small\, firm texture fruit phenotype plant with leaf from USA: Washington State, Irradiated_Cherry_F1_1-15	OXFORD_NANOPORE	1227327051 bp

PRJNA705581

Total genomic DNA was extracted using CTAB method. Paired-end 150bp library was constructed and sequeced on Illumina HiSeq X.

Library	Title	Platform	Total Base	VCF File
SRR13810431	WGS of Prunus avium: 2 years young fruit period stage plant with young leaves, Staccato, A1	ILLUMINA	8528515500 bp

PRJNA547767

Prunus avium strain:F12/1 Genome sequencing and assembly。

Library	Title	Platform	Total Base	VCF File
SRR9222867	WGS of Prunus avium: leaf from Chile, F12, F1201	ILLUMINA	21688209143 bp

PRJNA544857

Rainier sequence genome.

Library	Title	Platform	Total Base	VCF File
SRR9127927	WGS of Prunus avium: leaf from Chile, Rainier, Rainier 1	ILLUMINA	27894608531 bp

PRJNA419491

With the aim to study the effects of the domestication at a genome-wide scale in cherry, researchers set out to reconstruct the genome sequence of a modern cherry variety ( BigStar*) and to analyze the genetic variation in samples exposed to different rates of selective pressure, such as wild cherry trees, landraces and the more recent modern varieties.

Pinosio et al., 2020

106

Library	Title	Platform	Total Base
SRR6371795	WGS of Prunus avium: leaf, Late Lory	ILLUMINA	1199144750 bp
SRR6371796	WGS of Prunus avium: leaf, Patty Skeena	ILLUMINA	1155579000 bp
SRR6371802	WGS of Prunus avium: leaf, Adriana	ILLUMINA	1276619500 bp
SRR6371804	WGS of Prunus avium: leaf, Kwar_13-2	ILLUMINA	13577987600 bp
SRR6371812	WGS of Prunus avium: leaf, Kwar_2-1	ILLUMINA	1630436600 bp
SRR6371814	WGS of Prunus avium: leaf, Agiorgitiko Lilantiou	ILLUMINA	970362000 bp
SRR6371816	WGS of Prunus avium: leaf, Tieton	ILLUMINA	1917117750 bp
SRR6371817	WGS of Prunus avium: leaf, Ulster	ILLUMINA	1747413500 bp
SRR6371818	WGS of Prunus avium: leaf, Bella Italia	ILLUMINA	1061268500 bp
SRR6371819	WGS of Prunus avium: leaf, Bertiello	ILLUMINA	788058750 bp
SRR6371823	WGS of Prunus avium: leaf, Capo di Serpe	ILLUMINA	1101046000 bp
SRR6371828	WGS of Prunus avium: leaf, Giorgia	ILLUMINA	1350401000 bp
SRR6371829	WGS of Prunus avium: leaf, Giulietta	ILLUMINA	1014927750 bp
SRR6371832	WGS of Prunus avium: leaf, Kavics	ILLUMINA	1102745500 bp
SRR6371835	WGS of Prunus avium: leaf, Cholomontas2	ILLUMINA	1031626000 bp
SRR6371836	WGS of Prunus avium: leaf, Hayntou3	ILLUMINA	936464250 bp
SRR6371837	WGS of Prunus avium: leaf, Cormor	ILLUMINA	1130834750 bp
SRR6371851	WGS of Prunus avium: leaf, IG6	ILLUMINA	1081857250 bp
SRR6371852	WGS of Prunus avium: leaf, Nimphaea4	ILLUMINA	1059118500 bp
SRR6371853	WGS of Prunus avium: leaf, Vorras3	ILLUMINA	1515680500 bp
SRR6371854	WGS of Prunus avium: leaf, Enrica	ILLUMINA	9844419000 bp
SRR6371855	WGS of Prunus avium: leaf, Van	ILLUMINA	10013217000 bp
SRR6371856	WGS of Prunus avium: leaf, Regina	ILLUMINA	9551152750 bp
SRR6371862	WGS of Prunus avium: leaf, Katalin	ILLUMINA	23126049750 bp
SRR6371865	WGS of Prunus avium: leaf, Hayntou1	ILLUMINA	10102374000 bp
SRR6371867	WGS of Prunus avium: leaf, Germersdorfer	ILLUMINA	11457938800 bp
SRR6371869	WGS of Prunus avium: leaf, Ravenna	ILLUMINA	10368569500 bp
SRR6371870	WGS of Prunus avium: leaf, Bakirtzeika	ILLUMINA	10829662500 bp
SRR6371871	WGS of Prunus avium: leaf, Ferrovia	ILLUMINA	10251823250 bp
SRR6371872	WGS of Prunus avium: leaf, Kordia	ILLUMINA	19277567600 bp
SRR6371873	WGS of Prunus avium: leaf, Summit	ILLUMINA	9891184600 bp
SRR6371874	WGS of Prunus avium: leaf, Hedelfinger	ILLUMINA	944323500 bp
SRR6371876	WGS of Prunus avium: leaf, Del Monte	ILLUMINA	1012871750 bp
SRR6371878	WGS of Prunus avium: leaf, Ciliegia di Udine	ILLUMINA	1249228000 bp
SRR6371880	WGS of Prunus avium: leaf, Francia	ILLUMINA	1114978000 bp
SRR6371883	WGS of Prunus avium: leaf, Donnisens Gelbe Knorfel	ILLUMINA	1217685000 bp
SRR6371889	WGS of Prunus avium: leaf, Melanzana	ILLUMINA	1188083500 bp
SRR6371792	WGS of Prunus avium: leaf, Larian	ILLUMINA	1477970500 bp
SRR6371793	WGS of Prunus avium: leaf, Lapins	ILLUMINA	1268576500 bp
SRR6371794	WGS of Prunus avium: leaf, Linda	ILLUMINA	1363671500 bp
SRR6371797	WGS of Prunus avium: leaf, Margit	ILLUMINA	1122581500 bp
SRR6371798	WGS of Prunus avium: leaf, Sumini	ILLUMINA	1353894250 bp
SRR6371799	WGS of Prunus avium: leaf, Santina	ILLUMINA	2060673750 bp
SRR6371800	WGS of Prunus avium: leaf, Techlovan	ILLUMINA	1434721250 bp
SRR6371801	WGS of Prunus avium: leaf, Sunburst	ILLUMINA	1312724500 bp
SRR6371803	WGS of Prunus avium: leaf, Maia_1-3	ILLUMINA	12802931400 bp
SRR6371805	WGS of Prunus avium: leaf, Douc_4-2	ILLUMINA	16722464200 bp
SRR6371806	WGS of Prunus avium: leaf, 9-465	ILLUMINA	11256375000 bp
SRR6371807	WGS of Prunus avium: leaf, 5-436	ILLUMINA	10668779000 bp
SRR6371808	WGS of Prunus avium: leaf, IG4	ILLUMINA	10632038500 bp
SRR6371809	WGS of Prunus avium: leaf, Katafito1	ILLUMINA	10322609250 bp
SRR6371810	WGS of Prunus avium: leaf, Blaze Star	ILLUMINA	1367366000 bp
SRR6371811	WGS of Prunus avium: leaf, Big Lory	ILLUMINA	1273306250 bp
SRR6371815	WGS of Prunus avium: leaf, Badacsony	ILLUMINA	1231480000 bp
SRR6371820	WGS of Prunus avium: leaf, Belge	ILLUMINA	1190998250 bp
SRR6371821	WGS of Prunus avium: leaf, Bella di Firenze	ILLUMINA	717886500 bp
SRR6371822	WGS of Prunus avium: leaf, Black Jant	ILLUMINA	1115675250 bp
SRR6371824	WGS of Prunus avium: leaf, Canada Giant Summita	ILLUMINA	941751500 bp
SRR6371825	WGS of Prunus avium: leaf, Cashmere	ILLUMINA	1422740000 bp
SRR6371826	WGS of Prunus avium: leaf, Celeste Sumpaca	ILLUMINA	998129500 bp
SRR6371827	WGS of Prunus avium: leaf, Early Lory	ILLUMINA	1416600000 bp
SRR6371830	WGS of Prunus avium: leaf, Hartland	ILLUMINA	1096147500 bp
SRR6371831	WGS of Prunus avium: leaf, Isabella	ILLUMINA	1824142500 bp
SRR6371833	WGS of Prunus avium: leaf, Lala Star	ILLUMINA	1191766750 bp
SRR6371834	WGS of Prunus avium: leaf, Cholomontas4	ILLUMINA	996867750 bp
SRR6371838	WGS of Prunus avium: leaf, 7-460	ILLUMINA	1189030000 bp
SRR6371839	WGS of Prunus avium: leaf, 4-434	ILLUMINA	1334624000 bp
SRR6371840	WGS of Prunus avium: leaf, Canebola1	ILLUMINA	956649750 bp
SRR6371841	WGS of Prunus avium: leaf, 8-464	ILLUMINA	1299202500 bp
SRR6371842	WGS of Prunus avium: leaf, IG2	ILLUMINA	1216697750 bp
SRR6371843	WGS of Prunus avium: leaf, IG1	ILLUMINA	1030791750 bp
SRR6371844	WGS of Prunus avium: leaf, Nimphaea1	ILLUMINA	969530000 bp
SRR6371845	WGS of Prunus avium: leaf, Nimphaea3	ILLUMINA	830602750 bp
SRR6371846	WGS of Prunus avium: leaf, Katafito4	ILLUMINA	801844250 bp
SRR6371847	WGS of Prunus avium: leaf, LE5	ILLUMINA	1148400500 bp
SRR6371848	WGS of Prunus avium: leaf, Katafito2	ILLUMINA	1289333000 bp
SRR6371849	WGS of Prunus avium: leaf, Katafito3	ILLUMINA	1014306500 bp
SRR6371850	WGS of Prunus avium: leaf, IG5	ILLUMINA	1249860250 bp
SRR6371857	WGS of Prunus avium: leaf, Stella	ILLUMINA	9866841250 bp
SRR6371859	WGS of Prunus avium: leaf, Vorras4	ILLUMINA	926743250 bp
SRR6371863	WGS of Prunus avium: leaf, Brooks	ILLUMINA	17370400212 bp
SRR6371864	WGS of Prunus avium: leaf, Durone di Vignola	ILLUMINA	11077500600 bp
SRR6371866	WGS of Prunus avium: leaf, Burlat	ILLUMINA	10216894600 bp
SRR6371868	WGS of Prunus avium: leaf, Basler Adlerkirsche	ILLUMINA	9691085500 bp
SRR6371875	WGS of Prunus avium: leaf, Giapponese	ILLUMINA	1034742750 bp
SRR6371877	WGS of Prunus avium: leaf, Cola Femmina	ILLUMINA	1311437250 bp
SRR6371879	WGS of Prunus avium: leaf, Cavaliere	ILLUMINA	990125000 bp
SRR6371881	WGS of Prunus avium: leaf, Etiche Bianche	ILLUMINA	1089812500 bp
SRR6371882	WGS of Prunus avium: leaf, Durone di Bisceglie	ILLUMINA	1375969500 bp
SRR6371884	WGS of Prunus avium: leaf, Vasiliadi	ILLUMINA	880043000 bp
SRR6371885	WGS of Prunus avium: leaf, Vesseaux	ILLUMINA	1293681250 bp
SRR6371886	WGS of Prunus avium: leaf, Zuccaro	ILLUMINA	1764938750 bp
SRR6371887	WGS of Prunus avium: leaf, 10-470	ILLUMINA	1392981000 bp
SRR6371888	WGS of Prunus avium: leaf, Mavro Proimo Vitalou	ILLUMINA	1043248500 bp
SRR6371890	WGS of Prunus avium: leaf, Montagnola	ILLUMINA	1063864750 bp
SRR6371891	WGS of Prunus avium: leaf, Schneiders	ILLUMINA	1116648750 bp
SRR6371892	WGS of Prunus avium: leaf, 1-430	ILLUMINA	1270333750 bp
SRR6371893	WGS of Prunus avium: leaf, 2-431	ILLUMINA	1144149750 bp
SRR6412211	WGS of Prunus avium: berry, Big Star	ILLUMINA	9931594800 bp
SRR6412212	WGS of Prunus avium: leaf, Big Star	ILLUMINA	5691187800 bp
SRR6412213	WGS of Prunus avium: wood, Big Star	ILLUMINA	7467116200 bp
SRR6412214	WGS of Prunus avium: flower, Big Star	ILLUMINA	9537127800 bp
SRR6371860	WGS of Prunus avium: leaf, Big Star	ILLUMINA	17309015886 bp
SRR6371813	WGS of Prunus avium: leaf, Big Star	ILLUMINA	9936577556 bp
SRR6371858	WGS of Prunus avium: leaf, Big Star	ILLUMINA	16434150400 bp
SRR6371861	WGS of Prunus avium: leaf, Big Star	ILLUMINA	16563536528 bp

Species Info.

Omics Data

Omics Analysis

Seq. Analysis

Omics Analysis

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