Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
Others

Project

Bioproject Description Publication GVCF File Library Num.
PRJEB47302 This project collects the sequencing data and assemblies generated for Malus sylvestris by the Darwin Tree of Life Project -
16
Library Title Platform Total Base VCF File
ERR6688403 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which in woodland pasture like setting with leaf from United Kingdom: Glen Falloch, SAMEA9239646 ILLUMINA 32130760292 bp
ERR6909396 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which along old railway track with leaf from United Kingdom: Balnamuir, SAMEA8712110 ILLUMINA 47922574040 bp
ERR6909397 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which steep hill with bracken with leaf from United Kingdom: Inverbeg, SAMEA8712109 ILLUMINA 50138259252 bp
ERR6909398 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which native woodland with leaf from United Kingdom: Inversnaid, SAMEA8712108 ILLUMINA 52978718440 bp
ERR6909399 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which pasture like with leaf from United Kingdom: Dundonnell, SAMEA8712101 ILLUMINA 44092319818 bp
ERR6909400 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which in birchwood on steep bank with leaf from United Kingdom: Struan, SAMEA9239969 ILLUMINA 56230039266 bp
ERR6909401 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which in pasture like setting with leaf from United Kingdom: Strathtay, SAMEA9239971 ILLUMINA 49785657642 bp
ERR6909402 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which in pasture like setting with leaf from United Kingdom: Strathtay, SAMEA9239972 ILLUMINA 51840938876 bp
ERR6909403 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which On shore with leaf from United Kingdom: Loch Lomond Inchfad, SAMEA9239973 ILLUMINA 60228437726 bp
ERR6808039 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which in woodland pasture like setting with leaf from United Kingdom: Glen Falloch, SAMEA9239646 PACBIO_SMRT 11239599678 bp
ERR6688721 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which in woodland pasture like setting with leaf from United Kingdom: Glen Falloch, SAMEA9239646 ILLUMINA 26369978922 bp
ERR6688722 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which in woodland pasture like setting with leaf from United Kingdom: Glen Falloch, SAMEA9239646 ILLUMINA 21903539956 bp
ERR6688723 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which in woodland pasture like setting with leaf from United Kingdom: Glen Falloch, SAMEA9239646 ILLUMINA 24512779186 bp
ERR6808038 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which in woodland pasture like setting with leaf from United Kingdom: Glen Falloch, SAMEA9239646 PACBIO_SMRT 7379265943 bp
ERR6909395 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which steep hill with bracken with leaf from United Kingdom: Inverbeg, SAMEA8712111 ILLUMINA 58072382112 bp
ERR6909404 WGS of Malus sylvestris: hermaphrodite and monoecious sporophyte stage plant which Above shingle beach with leaf from United Kingdom: Loch Lomond Inchlonaig, SAMEA9239974 ILLUMINA 49382069976 bp
PRJEB43865 1500 genome skims from the Norwegian arctic vascular flora Wang et al., 2021
1
Library Title Platform Total Base VCF File
ERR5554945 WGS of Malus sylvestris: herbarium plant with leaf (PO_0025034) from Norway, TROM_V_92767 ILLUMINA 810241556 bp
PRJNA322175 Performed deep genome sequencing of apple accessions. Duan et al., 2017
29
Library Title Platform Total Base VCF File
SRR3571233 WGS of Malus sylvestris: leaf from USA, NA, A50_CAAAAG ILLUMINA 6957779510 bp
SRR3571234 WGS of Malus sylvestris: leaf from USA, NA, A50_TCGAAG_L005 ILLUMINA 4445381074 bp
SRR3571235 WGS of Malus sylvestris: leaf from USA, NA, A50_TCGAAG_L006 ILLUMINA 4414306606 bp
SRR3571236 WGS of Malus sylvestris: leaf from Germany, NA, A51_ATCACG_L005 ILLUMINA 3763186270 bp
SRR3571237 WGS of Malus sylvestris: leaf from Germany, NA, A51_ATCACG_L006 ILLUMINA 3732551556 bp
SRR3571238 WGS of Malus sylvestris: leaf from Germany, NA, A51_CAACTA ILLUMINA 5731898090 bp
SRR3571239 WGS of Malus sylvestris: leaf from Germany, NA, A51_CAACTA_2 ILLUMINA 3424019224 bp
SRR3571240 WGS of Malus sylvestris: leaf from Germany, NA, A52_CACCGG ILLUMINA 3414716718 bp
SRR3571241 WGS of Malus sylvestris: leaf from Germany, NA, A52_CGATGT_L003 ILLUMINA 4159273728 bp
SRR3571242 WGS of Malus sylvestris: leaf from Germany, NA, A52_CGATGT_L004 ILLUMINA 4155444818 bp
SRR3571243 WGS of Malus sylvestris: leaf from Germany, NA, A53_CACGAT ILLUMINA 7462394330 bp
SRR3571244 WGS of Malus sylvestris: leaf from Germany, NA, A53_TTAGGC_L003 ILLUMINA 3997328308 bp
SRR3571245 WGS of Malus sylvestris: leaf from Germany, NA, A53_TTAGGC_L004 ILLUMINA 3992748160 bp
SRR3571246 WGS of Malus sylvestris: leaf from Germany, NA, A54_CACTCA ILLUMINA 5904693430 bp
SRR3571247 WGS of Malus sylvestris: leaf from Germany, NA, A54_TGACCA_L003 ILLUMINA 4370689352 bp
SRR3571248 WGS of Malus sylvestris: leaf from Germany, NA, A54_TGACCA_L004 ILLUMINA 4366927910 bp
SRR3571249 WGS of Malus sylvestris: leaf from Yugoslavia, NA, A55_ACAGTG_L003 ILLUMINA 4309166818 bp
SRR3571250 WGS of Malus sylvestris: leaf from Yugoslavia, NA, A55_ACAGTG_L004 ILLUMINA 4308988250 bp
SRR3571251 WGS of Malus sylvestris: leaf from Yugoslavia, NA, A55_CAGGCG ILLUMINA 6708325698 bp
SRR3571252 WGS of Malus sylvestris: leaf from United Kingdom, NA, A56_CATGGC ILLUMINA 5976422960 bp
SRR3571253 WGS of Malus sylvestris: leaf from United Kingdom, NA, A56_CATGGC_2 ILLUMINA 3446238874 bp
SRR3571254 WGS of Malus sylvestris: leaf from United Kingdom, NA, A56_GCCAAT_L007 ILLUMINA 8998037076 bp
SRR3571255 WGS of Malus sylvestris: leaf from Yugoslavia, NA, A57_CAGATC_L007 ILLUMINA 9102683580 bp
SRR3571256 WGS of Malus sylvestris: leaf from Yugoslavia, NA, A57_CATTTT ILLUMINA 6321749390 bp
SRR3571257 WGS of Malus sylvestris: leaf from Yugoslavia, NA, A57_CATTTT_2 ILLUMINA 3628696100 bp
SRR3571258 WGS of Malus sylvestris: leaf from Norway, NA, A58_ACTTGA_L007 ILLUMINA 11194144514 bp
SRR3571259 WGS of Malus sylvestris: leaf from Russia, NA, A59_CGGAAT ILLUMINA 6988690418 bp
SRR3571260 WGS of Malus sylvestris: leaf from Russia, NA, A59_CGGAAT_2 ILLUMINA 5324970304 bp
SRR3571261 WGS of Malus sylvestris: leaf from Russia, NA, A59_GATCAG_L007 ILLUMINA 6994219094 bp

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