Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
Others

Project

Bioproject Description Publication GVCF File Library Num.
PRJNA310042 Peach high depth resequencing to study peach evolution aspects. Yu et al., 2018
15
Library Title Platform Total Base VCF File
SRR3141032 WGS of Prunus dulcis: young leaves from China:Xinjiang, Shuang Guo ILLUMINA 14390324250 bp
SRR3141040 WGS of Prunus dulcis: young leaves from China:Xinjiang, Zhi pi ILLUMINA 12944426000 bp
SRR3141049 WGS of Prunus dulcis: young leaves from China:Xinjiang, Gong Ba Dan ILLUMINA 13811185000 bp
SRR3141057 WGS of Prunus dulcis: young leaves from China:Xinjiang, Wan Feng ILLUMINA 13357129500 bp
SRR3141065 WGS of Prunus dulcis: young leaves from China:Xinjiang, Ai Feng ILLUMINA 13448192750 bp
SRR3141073 WGS of Prunus dulcis: young leaves from China:Xinjiang, Ba Dan Wang ILLUMINA 14728700750 bp
SRR3141083 WGS of Prunus dulcis: young leaves from China:Xinjiang, Huang Shuang ILLUMINA 13485066750 bp
SRR3141098 WGS of Prunus dulcis: young leaves from China:Xinjiang, A Yue Hun Zi ILLUMINA 13625641250 bp
SRR3141113 WGS of Prunus dulcis: young leaves from China:Xinjiang, Tao Ba Dan ILLUMINA 14079339250 bp
SRR3141181 WGS of Prunus dulcis: young leaves from China:Xinjiang, Da Ba Dan ILLUMINA 15339226400 bp
SRR3141192 WGS of Prunus dulcis: young leaves from China:Xinjiang, Ye Er Qiang ILLUMINA 13882072500 bp
SRR3141204 WGS of Prunus dulcis: young leaves from China:Xinjiang, Bian Zui He ILLUMINA 13129587250 bp
SRR3141229 WGS of Prunus dulcis: young leaves from USA, Ao 2 # ILLUMINA 12201962750 bp
SRR3141238 WGS of Prunus dulcis: young leaves from USA, Nonpareil ILLUMINA 16455983400 bp
SRR3141248 WGS of Prunus dulcis: young leaves from USA, Mission ILLUMINA 12820461250 bp
PRJNA339570 Prunus dulcis genomic resequencing to investigate domestication. -
8
Library Title Platform Total Base VCF File
SRR4045222 WGS of Prunus dulcis: 29 years mature plant with leaf from USA: California, Prunus dulcis DPRU 1207.2 ILLUMINA 5071741000 bp
SRR4045223 WGS of Prunus dulcis: 32 years mature plant with leaf from USA: California, Prunus dulcis accession DPRU 0210 cultivar Languedoc ILLUMINA 7338381600 bp
SRR4045224 WGS of Prunus dulcis: 20 years mature plant with leaf from USA: California, Prunus dulcis DPRU 2331.9 ILLUMINA 5934415800 bp
SRR4045225 WGS of Prunus dulcis: 23 years mature plant with leaf from USA: California, Prunus dulcis accession DPRU 1791.3 collector identifier BE-1609 ILLUMINA 6062523200 bp
SRR4045226 WGS of Prunus dulcis: 21 years mature plant with leaf from USA: California, Prunus dulcis accession DPRU 2301 cultivar Tuono ILLUMINA 5985515800 bp
SRR4045227 WGS of Prunus dulcis: 19 years mature plant with leaf from USA: California, Prunus dulcis accession DPRU 2374.12 ILLUMINA 5616283000 bp
SRR4045228 WGS of Prunus dulcis: 28 years mature plant with leaf from USA: California, Prunus dulcis accession DPRU 1456.4 ILLUMINA 5582306800 bp
SRR4045229 WGS of Prunus dulcis: 28 years mature plant with leaf from USA: California, Prunus dulcis DPRU 1462.2 ILLUMINA 6764746000 bp
PRJNA448729 Characterization of the RMja resistance gene to root-knot nematodes from the Alnem1 almond rootstock. Ghelder et al., 2018
2
Library Title Platform Total Base VCF File
SRR7010336 WGS of Prunus dulcis: adult plant with leaves from France, Lauranne, reseq_Lauranne ILLUMINA 10982092500 bp
SRR7010337 WGS of Prunus dulcis: adult plant with leaves from France, Alnem1, reseq_Alnem1 ILLUMINA 12655035500 bp
PRJNA789770 Re-sequencing of prunus dulcis plastid genome Wax et al., 2023
21
Library Title Platform Total Base VCF File
SRR17286955 WGS of Prunus dulcis var. amara: adult stage plant with seed from Iran, bitter almond, bitter_iran1 ILLUMINA 54619752 bp
SRR17286950 WGS of Prunus dulcis var. amara: adult stage plant with seed, bitter almond, bitter_maroc ILLUMINA 114575371 bp
SRR17286951 WGS of Prunus dulcis var. amara: adult stage plant with seed from Kyrgyzstan, bitter almond, bitter_kirg ILLUMINA 71802849 bp
SRR17286952 WGS of Prunus dulcis: adult stage plant with seed from USA: California, Nonpareil, dulcis_1 ILLUMINA 80997110 bp
SRR17286953 WGS of Prunus dulcis var. amara: adult stage plant with seed from Kyrgyzstan, bitter almond, bitter_kirg ILLUMINA 115275953 bp
SRR17286954 WGS of Prunus dulcis: adult stage plant with seed from USA: California, Nonpareil, dulcis_1 ILLUMINA 62704635 bp
SRR17286956 WGS of Prunus dulcis: adult stage plant with seed from Australia, Monterey, sweet_mon ILLUMINA 120499714 bp
SRR17286957 WGS of Prunus dulcis var. amara: adult stage plant with seed from Syria, bitter almond, bitter_syr ILLUMINA 138905829 bp
SRR17286958 WGS of Prunus dulcis: adult stage plant with seed from Australia, Monterey, sweet_mon ILLUMINA 113416842 bp
SRR17286959 WGS of Prunus dulcis: adult stage plant with seed from Spain, Larguetta, sweet_larg ILLUMINA 54913700 bp
SRR17286960 WGS of Prunus dulcis: adult stage plant with seed from Spain, Larguetta, sweet_larg ILLUMINA 87193908 bp
SRR17286961 WGS of Prunus dulcis: adult stage plant with seed from Australia, Carmel, sweet_carm ILLUMINA 37265833 bp
SRR17286962 WGS of Prunus dulcis var. amara: adult stage plant with seed from Spain, bitter almond, bitter_spa ILLUMINA 151037710 bp
SRR17286963 WGS of Prunus dulcis var. amara: adult stage plant with seed, bitter almond, bitter_maroc ILLUMINA 112606090 bp
SRR17286964 WGS of Prunus dulcis var. amara: adult stage plant with seed from Turkey, bitter almond, bitter_turk ILLUMINA 56334894 bp
SRR17286965 WGS of Prunus dulcis var. amara: adult stage plant with seed from Turkey, bitter almond, bitter_turk ILLUMINA 105545544 bp
SRR17286966 WGS of Prunus dulcis: adult stage plant with seed from Australia, Marcona, sweet_marc ILLUMINA 62637598 bp
SRR17286967 WGS of Prunus dulcis: adult stage plant with seed from Australia, Marcona, sweet_marc ILLUMINA 72646266 bp
SRR17286968 WGS of Prunus dulcis var. amara: adult stage plant with seed from Spain, bitter almond, bitter_spa ILLUMINA 101175670 bp
SRR17286969 WGS of Prunus dulcis: adult stage plant with seed from Australia, Ferragnes, sweet_fer ILLUMINA 39113540 bp
SRR17286970 WGS of Prunus dulcis: adult stage plant with seed from Australia, Ferragnes, sweet_fer ILLUMINA 111390230 bp
PRJNA769745 We generated a comprehensive genome sequence and annotation for the widely cultivated almond cultivar Nonpareil, addressing the previous lack of genomic resources. D’Amico-Willman et al., 2022
2
Library Title Platform Total Base VCF File
SRR16323812 WGS of Prunus dulcis: plant with leaf from USA: California\, Davis, Nonpareil, Nonpareil Almond Leaf ILLUMINA 137449687838 bp
SRR16267434 WGS of Prunus dulcis: plant with leaf from USA: California\, Davis, Nonpareil, Nonpareil Almond Leaf PACBIO_SMRT 147812822323 bp
PRJNA645279 We constructed a pan-genome of P. persica and analyze the evolution of different species in Prunus. Cao et al., 2020
2
Library Title Platform Total Base VCF File
SRR12283420 WGS of Prunus dulcis: young plant with leaf from China, Xinjiang Kao Cha Bian Tao 3#, ZGSP-1035 ILLUMINA 9234667200 bp
SRR12283421 WGS of Prunus dulcis: young plant with leaf from China, Tao Xing Bian Tao, ZGSP-1034 ILLUMINA 10226892000 bp

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