Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
Others

Project

Bioproject Description Publication GVCF File Library Num.
PRJEB55612 Plant genome sequencing and assembly of Persea americana -
1
Library Title Platform Total Base VCF File
ERR10116813 WGS of Persea americana: adult plant with leaf material from Portugal: Outeiro da Zibreira\, Dois Portos\, Torres Vedras, BPTPS118 ILLUMINA 7208681234 bp
PRJNA508502 Persea americana Genome sequencing and assembly Rendón-Anaya et al., 2019
12
Library Title Platform Total Base VCF File
SRR8295606 WGS of Persea americana: plant with young leaves from Mexico, 001-01 ILLUMINA 64427089172 bp
SRR8295605 WGS of Persea americana: plant with young leaves from Guatemala:Suchitepequez, Persea schiedeana, CH-GU-01 ILLUMINA 33822612754 bp
SRR8295599 WGS of Persea americana: plant with young leaves from Mexico: Yucatan, var. americana, 263-C ILLUMINA 15390098210 bp
SRR8295610 WGS of Persea americana: plant with young leaves from Mexico: Chiapas, var. Carmen/Hass, Mendez ILLUMINA 29723546338 bp
SRR8295603 WGS of Persea americana: plant with young leaves from Costa Rica: Puntarenas, var. costaricensis, CH-CR-25 ILLUMINA 15133509124 bp
SRR8295607 WGS of Persea americana: plant with young leaves from Mexico, var. drymifolia, 069-02 ILLUMINA 28378001916 bp
SRR8295608 WGS of Persea americana: plant with young leaves from Mexico, var. drymifolia, PequenoCharly ILLUMINA 24419026540 bp
SRR8295600 WGS of Persea americana: plant with young leaves from Mexico: Chiapas, var. guatemalensis, CH-G-10 ILLUMINA 15435454078 bp
SRR8295601 WGS of Persea americana: plant with young leaves from Mexico: Chiapas, var. guatemalensis, CH-G-11 ILLUMINA 20174306408 bp
SRR8295609 WGS of Persea americana: plant with young leaves from Mexico: Chiapas, var. Hass, Hass-2 ILLUMINA 64317825958 bp
SRR8295604 WGS of Persea americana: plant with young leaves from Mexico: Michoacan, var. Hass, Hass-R ILLUMINA 24367612086 bp
SRR8295611 WGS of Persea americana: plant with young leaves from Australia:University of Queensland, var. Velvick, Velvick ILLUMINA 1.28195E+11 bp
PRJNA564097 Persea americana genome sequencing Talavera et al., 2019
1
Library Title Platform Total Base VCF File
SRR10727792 WGS of Persea americana: young leaf plant with leaf from Spain, Hass, Peame_Hass_R1 ILLUMINA 72151717299 bp
PRJNA694184 Whole genome sequencing of Persea americana Sharma et al., 2021
4
Library Title Platform Total Base VCF File
SRR13510945 WGS of Persea americana: mature plant with leaves from Australia, Hass, Avo Hass Cell-3 PACBIO_SMRT 15299284266 bp
SRR13510946 WGS of Persea americana: mature plant with leaves from Australia, Hass, Avo Hass Cell-2 PACBIO_SMRT 1091026913 bp
SRR13510947 WGS of Persea americana: mature plant with leaves from Australia, Hass, Avo Hass Cell-1 PACBIO_SMRT 1095781518 bp
SRR27756269 WGS of Persea americana: mature plant with leaf from Australia: Nambour, Hass, Hass HiFi Assembly ILLUMINA 1.21877E+11 bp
PRJNA758103 Reference genome of Persea americana Solares et al., 2022
21
Library Title Platform Total Base VCF File
SRR18503088 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Anaheim, Anaheim ILLUMINA 16656257340 bp
SRR18503073 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Bacon, Bacon ILLUMINA 22106728576 bp
SRR18503087 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Carlsbad, Carlsbad ILLUMINA 20613187878 bp
SRR18503086 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Fairchild, Fairchild ILLUMINA 20641781540 bp
SRR18503080 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Fuerte, Fuerte ILLUMINA 23351675558 bp
SRR18503072 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Ganter, Ganter ILLUMINA 24207817774 bp
SRR18503092 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Gwen, Gwen ILLUMINA 17267307228 bp
SRR18438248 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Gwen, Gwen PACBIO_SMRT 81193559929 bp
SRR18503071 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Linda, Linda ILLUMINA 16398792072 bp
SRR18503085 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Lyon, Lyon ILLUMINA 21827836106 bp
SRR18503070 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Nabal, Nabal ILLUMINA 17302282150 bp
SRR18503090 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Nimlioh, Nimlioh ILLUMINA 20578279396 bp
SRR18503091 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Pinkerton, Pinkerton ILLUMINA 21497684270 bp
SRR18503074 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Reed, Reed ILLUMINA 19642708764 bp
SRR18503084 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Simmonds, Simmonds ILLUMINA 12610732686 bp
SRR18503075 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Taft, Taft ILLUMINA 15883319144 bp
SRR18503076 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Thille, Thille ILLUMINA 19420542766 bp
SRR18503083 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, TopaTopa, TopaTopa ILLUMINA 14174165244 bp
SRR18503082 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, VC26, VC26 ILLUMINA 19380079900 bp
SRR18503081 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Waldin, Waldin ILLUMINA 20076470458 bp
SRR18503089 WGS of Persea americana: adult clonal plant with young leaves from USA: Irvine\, CA, Zutano, Zutano ILLUMINA 20382443268 bp
PRJNA945882 Persea americana herbarium genomes -
25
Library Title Platform Total Base VCF File
SRR23886739 WGS of Persea americana: 30 year plant with herbarium leaf from Costa Rica:Puntarenas, Thomsen_568 ILLUMINA 8792944118 bp
SRR23886730 WGS of Persea americana: 5 year plant with herbarium leaf from Costa Rica:San Jos, Jones_10235 ILLUMINA 6791393818 bp
SRR23886743 WGS of Persea americana: 39 year plant with herbarium leaf from Dominican Republic:Cordillera Central, Zanoni_30704 ILLUMINA 11783470730 bp
SRR23886741 WGS of Persea americana: 39 year plant with herbarium leaf from Dominican Republic:Samana, Zanoni_29315 ILLUMINA 15267332462 bp
SRR23886738 WGS of Persea americana: 30 year plant with herbarium leaf from Ecuador:Napo, Ponce_276 ILLUMINA 10710177830 bp
SRR23886732 WGS of Persea americana: 24 year plant with herbarium leaf from Guatemala:Jalapa, Morales_303 ILLUMINA 5471009652 bp
SRR23886747 WGS of Persea americana: 38 year plant with herbarium leaf from Honduras:Francisco Morazan, Nolasco_170 ILLUMINA 1076334644 bp
SRR23886746 WGS of Persea americana: 38 year plant with herbarium leaf from Honduras:Olancho, Flores_152 ILLUMINA 8771041870 bp
SRR23886729 WGS of Persea americana: 59 year plant with herbarium leaf from Mexico:Chiapas, Matuda_37384 ILLUMINA 7725206508 bp
SRR23886734 WGS of Persea americana: 35 year plant with herbarium leaf from Mexico:Chiapas, Breedlove_67047 ILLUMINA 5620462808 bp
SRR23886742 WGS of Persea americana: 58 year plant with herbarium leaf from Mexico:Chiapas, Breedlove_9306 ILLUMINA 8542830134 bp
SRR23886740 WGS of Persea americana: 40 year plant with herbarium leaf from Mexico:Guerrero, Viveros_194 ILLUMINA 7838526874 bp
SRR23886736 WGS of Persea americana: 29 year plant with herbarium leaf from Mexico:Oaxaca, Panero_5186 ILLUMINA 8015811444 bp
SRR23886735 WGS of Persea americana: 36 year plant with herbarium leaf from Mexico:Queretaro, Nava_3825 ILLUMINA 7568067452 bp
SRR23886750 WGS of Persea americana: 16 year plant with herbarium leaf from Mexico:Quertaro, Ramirez_851 ILLUMINA 10506154180 bp
SRR23886751 WGS of Persea americana: 20 year plant with herbarium leaf from Mexico:San Luis Potos, Garcia_4025 ILLUMINA 16184120808 bp
SRR23886749 WGS of Persea americana: 20 year plant with herbarium leaf from Mexico:Tamaulipas, Boyle_7427 ILLUMINA 5123176320 bp
SRR23886733 WGS of Persea americana: 47 year plant with herbarium leaf from Mexico:Veracruz, Reyes_83 ILLUMINA 4559313328 bp
SRR23886752 WGS of Persea americana: 47 year plant with herbarium leaf from Mexico:Veracruz, Baez_189 ILLUMINA 11006703778 bp
SRR23886728 WGS of Persea americana: 9 year plant with herbarium leaf from Nicaragua:Matagalpa, Stevens_34535 ILLUMINA 24133984210 bp
SRR23886744 WGS of Persea americana: 10 year plant with herbarium leaf from Nicaragua:Nueva Segovia, Stevens_34298 ILLUMINA 12348287136 bp
SRR23886745 WGS of Persea americana: 8 year plant with herbarium leaf from Nicaragua:Nueva Segovia, Stevens_35580 ILLUMINA 7921322892 bp
SRR23886737 WGS of Persea americana: 34 year plant with herbarium leaf from Panama:Bocas del Toro, Peterson_7105 ILLUMINA 10165020416 bp
SRR23886748 WGS of Persea americana: 37 year plant with herbarium leaf from Panama:Colon, McPherson_8518 ILLUMINA 13412285080 bp
SRR23886731 WGS of Persea americana: 16 year plant with herbarium leaf from Peru:La Convencion, Calatayud_4113 ILLUMINA 28886813702 bp

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