| Bioproject |
Description |
Publication |
GVCF File |
Library Num. |
| PRJEB54826 |
Sequenced the first ancient tree genomes using two white oak wood remains from Germany dating to the Last Little Ice Age (15th century CE, 7.3X and 4.0X) and one from France dating to the Bronze Age (1700 BCE, 3.4X) |
- |
 |
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| ERR10015086 |
WGS of Quercus robur: leaf from Germany, BXC_YOSDC_8_1_H37HVBBXY.12BA190, Ham.Rob.2 |
ILLUMINA |
33494638395 bp |
|
| ERR10015087 |
WGS of Quercus robur: leaf from Switzerland, BXC_MOSDC_6_1_HM2YHBBXX.12BA020, Con.229 |
ILLUMINA |
97564524831 bp |
|
| ERR10015093 |
WGS of Quercus robur: ancient wood from France, CKW_AA 748x1a_AMIS_3_00748_U_i1_l1_r1, BA.Seine.748 |
ILLUMINA |
5464890352 bp |
|
| ERR10015094 |
WGS of Quercus robur: ancient wood from France, CKW_AB 748x1b_AMIS_3_00748_U_i2_l1_r1, BA.Seine.748 |
ILLUMINA |
8568280432 bp |
|
| ERR10015095 |
WGS of Quercus robur: ancient wood from France, CKW_AC 748x2a_AMIS_3_00748_U_i3_l2_r2, BA.Seine.748 |
ILLUMINA |
6696460928 bp |
|
| ERR10015096 |
WGS of Quercus robur: ancient wood from France, CKW_AD 748x2b_AMIS_3_00748_U_i6_l2_r2, BA.Seine.748 |
ILLUMINA |
8634356352 bp |
|
| ERR10015097 |
WGS of Quercus robur: ancient wood from France, CKW_AE 748x3a_AMIS_3_00748_U_i7_l3_r3, BA.Seine.748 |
ILLUMINA |
6571506744 bp |
|
| ERR10015098 |
WGS of Quercus robur: ancient wood from France, CKW_AF 748x3b_AMIS_3_00748_U_i10_l3_r3, BA.Seine.748 |
ILLUMINA |
6885200392 bp |
|
| ERR10015099 |
WGS of Quercus robur: ancient wood from France, CKW_AG 748x4a_AMIS_3_00748_noU_i12_l4_r4, BA.Seine.748 |
ILLUMINA |
5446719512 bp |
|
| ERR10015100 |
WGS of Quercus robur: ancient wood from France, CKW_AH 748x4b_AMIS_3_00748_U_i16_l4_r4, BA.Seine.748 |
ILLUMINA |
5680569232 bp |
|
| ERR10015101 |
WGS of Quercus robur: ancient wood from France, CKW_AI 748x2a_AMIS_3_00748_U_i3_l2_r2, BA.Seine.748 |
ILLUMINA |
8404338019 bp |
|
| ERR10015102 |
WGS of Quercus robur: ancient wood from France, CKW_AJ 748x2b_AMIS_3_00748_U_i6_l2_r2, BA.Seine.748 |
ILLUMINA |
11176160402 bp |
|
| ERR10015103 |
WGS of Quercus robur: ancient wood from France, CKW_AK 748x3a_AMIS_3_00748_U_i7_l3_r3, BA.Seine.748 |
ILLUMINA |
8000071695 bp |
|
| ERR10015104 |
WGS of Quercus robur: ancient wood from France, CKW_AL 748x4a_AMIS_3_00748_U_i12_l4_r4, BA.Seine.748 |
ILLUMINA |
7091323338 bp |
|
| ERR10015105 |
WGS of Quercus robur: ancient wood from France, CKW_AM 748x4b_AMIS_3_00748_U_i16_l4_r4, BA.Seine.748 |
ILLUMINA |
7174112264 bp |
|
| ERR10015106 |
WGS of Quercus robur: ancient wood from France, CKW_AI 748x2a_AMIS_3_00748_U_i3_l2_r2, BA.Seine.748 |
ILLUMINA |
10452488848 bp |
|
| ERR10015107 |
WGS of Quercus robur: ancient wood from France, CKW_AI 748x2a_AMIS_3_00748_U_i3_l2_r2, BA.Seine.748 |
ILLUMINA |
10232932752 bp |
|
| ERR10015108 |
WGS of Quercus robur: ancient wood from France, CKW_AJ 748x2b_AMIS_3_00748_U_i6_l2_r2, BA.Seine.748 |
ILLUMINA |
13746081696 bp |
|
| ERR10015109 |
WGS of Quercus robur: ancient wood from France, CKW_AJ 748x2b_AMIS_3_00748_U_i6_l2_r2, BA.Seine.748 |
ILLUMINA |
13552141552 bp |
|
| ERR10015110 |
WGS of Quercus robur: ancient wood from France, CKW_AK 748x3a_AMIS_3_00748_U_i7_l3_r3, BA.Seine.748 |
ILLUMINA |
9543717936 bp |
|
| ERR10015111 |
WGS of Quercus robur: ancient wood from France, CKW_AK 748x3a_AMIS_3_00748_U_i7_l3_r3, BA.Seine.748 |
ILLUMINA |
9344975200 bp |
|
| ERR10015112 |
WGS of Quercus robur: ancient wood from France, CKW_AL 748x4a_AMIS_3_00748_U_i12_l4_r4, BA.Seine.748 |
ILLUMINA |
8588996512 bp |
|
| ERR10015113 |
WGS of Quercus robur: ancient wood from France, CKW_AL 748x4a_AMIS_3_00748_U_i12_l4_r4, BA.Seine.748 |
ILLUMINA |
8408247384 bp |
|
| ERR10015114 |
WGS of Quercus robur: ancient wood from France, CKW_AM 748x4b_AMIS_3_00748_U_i16_l4_r4, BA.Seine.748 |
ILLUMINA |
8584595504 bp |
|
| ERR10015115 |
WGS of Quercus robur: ancient wood from France, CKW_AM 748x4b_AMIS_3_00748_U_i16_l4_r4, BA.Seine.748 |
ILLUMINA |
8450614496 bp |
|
| ERR10015116 |
WGS of Quercus robur: ancient wood from France, CKW_AI 748x2a_AMIS_3_00748_U_i3_l2_r2, BA.Seine.748 |
ILLUMINA |
9933962888 bp |
|
| ERR10015117 |
WGS of Quercus robur: ancient wood from France, CKW_AJ 748x2b_AMIS_3_00748_U_i6_l2_r2, BA.Seine.748 |
ILLUMINA |
13384204656 bp |
|
| ERR10015118 |
WGS of Quercus robur: ancient wood from France, CKW_AK 748x3a_AMIS_3_00748_U_i7_l3_r3, BA.Seine.748 |
ILLUMINA |
9066067968 bp |
|
| ERR10015119 |
WGS of Quercus robur: ancient wood from France, CKW_AL 748x4a_AMIS_3_00748_U_i12_l4_r4, BA.Seine.748 |
ILLUMINA |
8306513632 bp |
|
| ERR10015120 |
WGS of Quercus robur: ancient wood from France, CKW_AM 748x4b_AMIS_3_00748_U_i16_l4_r4, BA.Seine.748 |
ILLUMINA |
8409753704 bp |
|
| ERR10015121 |
WGS of Quercus robur: ancient wood from France, 748-AMIS-3-00748-noU-i21-l15-r15, BA.Seine.748 |
ILLUMINA |
211569977 bp |
|
| ERR10015425 |
WGS of Quercus robur: ancient wood from Germany, Sample_382_a_5_ACAGTG, MA.Ham.382 |
ILLUMINA |
29107468584 bp |
|
| ERR10015426 |
WGS of Quercus robur: ancient wood from Germany, Sample_382_d_4_TGACCA, MA.Ham.382 |
ILLUMINA |
9991740096 bp |
|
| ERR10015428 |
WGS of Quercus robur: ancient wood from Germany, Sample_382b_GCCAAT, MA.Ham.382 |
ILLUMINA |
31351787424 bp |
|
| ERR10015430 |
WGS of Quercus robur: ancient wood from Germany, Sample_382c_TTAGGC, MA.Ham.382 |
ILLUMINA |
14593906809 bp |
|
|
| PRJEB43635 |
Study to investigate whether genome differences occur within branches of one tree |
- |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| ERR9682738 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-G2, 802 |
PACBIO_SMRT |
4943174297 bp |
|
| ERR9682739 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-H2, 803 |
PACBIO_SMRT |
2445843104 bp |
|
| ERR9682740 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-B2, 796 |
PACBIO_SMRT |
5944291630 bp |
|
| ERR9679891 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:B7, 796 |
ILLUMINA |
61964008170 bp |
|
| ERR9679893 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:D7, 798 |
ILLUMINA |
62382093044 bp |
|
| ERR9679896 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:G7, 801 |
ILLUMINA |
73969782308 bp |
|
| ERR9679898 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:A8, 803 |
ILLUMINA |
72610012510 bp |
|
| ERR9679900 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:C8, 805 |
ILLUMINA |
58118245946 bp |
|
| ERR9679902 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:E8, 807 |
ILLUMINA |
71231470090 bp |
|
| ERR9679903 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:F8, 808 |
ILLUMINA |
57890161352 bp |
|
| ERR9679904 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:G8, 809 |
ILLUMINA |
61376839536 bp |
|
| ERR9682741 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-C2, 797 |
PACBIO_SMRT |
10771312711 bp |
|
| ERR9682742 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-D2, 799 |
PACBIO_SMRT |
16506030979 bp |
|
| ERR9679892 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:C7, 797 |
ILLUMINA |
61782068874 bp |
|
| ERR9679894 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:E7, 799 |
ILLUMINA |
73909955806 bp |
|
| ERR9679895 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:F7, 800 |
ILLUMINA |
69744764558 bp |
|
| ERR9679897 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:H7, 802 |
ILLUMINA |
74742565276 bp |
|
| ERR9679899 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:B8, 804 |
ILLUMINA |
61801064976 bp |
|
| ERR9679901 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:D8, 806 |
ILLUMINA |
57731410824 bp |
|
| ERR9679905 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN606678N:H8, 810 |
ILLUMINA |
62640419616 bp |
|
| ERR9718773 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-A3, 804 |
PACBIO_SMRT |
972446300 bp |
|
| ERR9718774 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-B3, 805 |
PACBIO_SMRT |
1485887288 bp |
|
| ERR9718775 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-E2, 800 |
PACBIO_SMRT |
11634674670 bp |
|
| ERR9718776 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-F2, 801 |
PACBIO_SMRT |
16472152581 bp |
|
| ERR9742061 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-G2, 802 |
PACBIO_SMRT |
4625811064 bp |
|
| ERR9742062 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-B2, 796 |
PACBIO_SMRT |
3527438017 bp |
|
| ERR9744390 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN801931W-A1, 798 |
PACBIO_SMRT |
14534204331 bp |
|
| ERR9744391 |
WGS of Quercus robur: Riparian woodland habitat plant with leaf from United Kingdom, DN798399W-G3, 810 |
PACBIO_SMRT |
10136877832 bp |
|
|
| PRJEB45102 |
This project collects the sequencing data and assemblies generated for Quercus robur |
- |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| ERR8282824 |
WGS of Quercus robur: riparian woodland habitat plant with leaf from United Kingdom Scotland, DN691572G-D2, SAMEA12362598 |
PACBIO_SMRT |
20510585329 bp |
|
| ERR8373983 |
WGS of Quercus robur: riparian woodland habitat plant with leaf from United Kingdom Scotland, DN691572G-D2, SAMEA12362598 |
PACBIO_SMRT |
9771392777 bp |
|
| ERR8097164 |
WGS of Quercus robur: riparian woodland habitat plant with leaf from United Kingdom Scotland, 18080, SAMEA12362597 |
ILLUMINA |
13977075816 bp |
|
| ERR8097165 |
WGS of Quercus robur: riparian woodland habitat plant with leaf from United Kingdom Scotland, 18080, SAMEA12362597 |
ILLUMINA |
8385177980 bp |
|
| ERR8097166 |
WGS of Quercus robur: riparian woodland habitat plant with leaf from United Kingdom Scotland, 18080, SAMEA12362597 |
ILLUMINA |
22088664748 bp |
|
| ERR8097167 |
WGS of Quercus robur: riparian woodland habitat plant with leaf from United Kingdom Scotland, 18080, SAMEA12362597 |
ILLUMINA |
14114817412 bp |
|
|
| PRJNA607895 |
Raw reads from samples of danish species, sequenced with the purpose of assembling mito genomes for future references. |
Margaryan et al., 2020 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR12432399 |
WGS of Quercus robur: leaves from Denmark, DM325 |
ILLUMINA |
893448276 bp |
|
|
| PRJNA327502 |
Quercus robur Genome sequencing and assembly |
Schmid-Siegert et al., 2017 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR3860149 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PE1 |
ILLUMINA |
15119470400 bp |
|
| SRR3860174 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PE2 |
ILLUMINA |
29936019600 bp |
|
| SRR3860182 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB7 |
PACBIO_SMRT |
203456812 bp |
|
| SRR3860183 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB8 |
PACBIO_SMRT |
271275526 bp |
|
| SRR3860184 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB9 |
PACBIO_SMRT |
260809778 bp |
|
| SRR3860185 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB10 |
PACBIO_SMRT |
419786828 bp |
|
| SRR3860207 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB11 |
PACBIO_SMRT |
713988416 bp |
|
| SRR3860230 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB12 |
PACBIO_SMRT |
736035204 bp |
|
| SRR3860242 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB13 |
PACBIO_SMRT |
636418207 bp |
|
| SRR3860265 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB14 |
PACBIO_SMRT |
694944760 bp |
|
| SRR3860289 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB15 |
PACBIO_SMRT |
1101365537 bp |
|
| SRR3860310 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB16 |
PACBIO_SMRT |
1246165765 bp |
|
| SRR3860329 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PE3 |
ILLUMINA |
14691602600 bp |
|
| SRR3860335 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB17 |
PACBIO_SMRT |
973074957 bp |
|
| SRR3860358 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB18 |
PACBIO_SMRT |
911662219 bp |
|
| SRR3860382 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB19 |
PACBIO_SMRT |
1054878226 bp |
|
| SRR3860390 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB20 |
PACBIO_SMRT |
980569050 bp |
|
| SRR3860406 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB21 |
PACBIO_SMRT |
1034476267 bp |
|
| SRR3860428 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB22 |
PACBIO_SMRT |
929611451 bp |
|
| SRR3860429 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0MP1 |
ILLUMINA |
10726429800 bp |
|
| SRR3860430 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB1 |
PACBIO_SMRT |
291494627 bp |
|
| SRR3860431 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB2 |
PACBIO_SMRT |
278222392 bp |
|
| SRR3860432 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB3 |
PACBIO_SMRT |
393494240 bp |
|
| SRR3860433 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB4 |
PACBIO_SMRT |
291339554 bp |
|
| SRR3860434 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB5 |
PACBIO_SMRT |
374027745 bp |
|
| SRR3860435 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech0PB6 |
PACBIO_SMRT |
385443238 bp |
|
| SRR3884561 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech66PE1 |
ILLUMINA |
15850547400 bp |
|
| SRR3884562 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech66PE2 |
ILLUMINA |
14691602600 bp |
|
| SRR3884563 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech66PE3 |
ILLUMINA |
17386094800 bp |
|
| SRR3884564 |
WGS of Quercus robur: 238 years mature plant with leaf from Switzerland:Lausanne\, University Campus, Ech66MP1 |
ILLUMINA |
12407660800 bp |
|
|
Species Info.
Omics Data
Seq. Analysis
Project
35