Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA762220 Study of different samples of Citrus clementina for assessing mutation rate. Perez-Roman et al., 2021
34
Library Title Platform Total Base VCF File
SRR15840233 WGS of Citrus clementina: the most basal part of 36 years old trunk, 1 year flushes, b, 36_0_1_b_R10 ILLUMINA 15147751336 bp
SRR15840234 WGS of Citrus clementina: the most basal part of 36 years old trunk, 1 year flushes, b, 36_0_1_b_R09 ILLUMINA 15013527992 bp
SRR15840235 WGS of Citrus clementina: 27 years old dominant branch of primary order, 1 year flushes, 27_0_1_R08 ILLUMINA 12892794228 bp
SRR15840236 WGS of Citrus clementina: 27 years old dominant branch of primary order, 1 year flushes, 27_0_1_R07 ILLUMINA 15672202926 bp
SRR15840237 WGS of Citrus clementina: 19 years old two branches of secondary order, 1 year flushes, 19_0_1_R06 ILLUMINA 18722499886 bp
SRR15840238 WGS of Citrus clementina: 19 years old two branches of secondary order, 1 year flushes, 19_0_1_R05 ILLUMINA 12699529112 bp
SRR15840239 WGS of Citrus clementina: around the tree from different orientations and heights leaves, b, RS_b_R34 ILLUMINA 14145058080 bp
SRR15840240 WGS of Citrus clementina: around the tree from different orientations and heights leaves, b, RS_b_R33 ILLUMINA 29356194390 bp
SRR15840241 WGS of Citrus clementina: around the tree from different orientations and heights leaves, a, RS_a_R32 ILLUMINA 16168879718 bp
SRR15840242 WGS of Citrus clementina: around the tree from different orientations and heights leaves, a, RS_a_R31 ILLUMINA 13247191714 bp
SRR15840243 WGS of Citrus clementina: 19 years old two branches of secondary order, 6 years old branches, 1 year flushes, b, 19_6_1_b_R04 ILLUMINA 13776203454 bp
SRR15840244 WGS of Citrus clementina: 19 years old two branches of secondary order, 3 year flushes, 19_0_3_R30 ILLUMINA 31354740980 bp
SRR15840245 WGS of Citrus clementina: 19 years old two branches of secondary order, 3 year flushes, 19_0_3_R29 ILLUMINA 16171548340 bp
SRR15840246 WGS of Citrus clementina: 27 years old dominant branch of primary order, 3 year flushes, 27_0_3_R28 ILLUMINA 14463786608 bp
SRR15840247 WGS of Citrus clementina: 27 years old dominant branch of primary order, 3 year flushes, 27_0_3_R27 ILLUMINA 16801745314 bp
SRR15840248 WGS of Citrus clementina: 19 years old two branches of secondary order, 6 years old branches, 3 year flushes, 19_6_3_R26 ILLUMINA 12814083918 bp
SRR15840249 WGS of Citrus clementina: 19 years old two branches of secondary order, 6 years old branches, 3 year flushes, 19_6_3_R25 ILLUMINA 16748846968 bp
SRR15840250 WGS of Citrus clementina: the most basal part of 36 years old trunk, 2 year flushes, b, 36_0_2_b_R24 ILLUMINA 14787740068 bp
SRR15840251 WGS of Citrus clementina: the most basal part of 36 years old trunk, 2 year flushes, b, 36_0_2_b_R23 ILLUMINA 13000004314 bp
SRR15840252 WGS of Citrus clementina: the most basal part of 36 years old trunk, 2 year flushes, a, 36_0_2_a_R22 ILLUMINA 14572599362 bp
SRR15840253 WGS of Citrus clementina: the most basal part of 36 years old trunk, 2 year flushes, a, 36_0_2_a_R21 ILLUMINA 14593958438 bp
SRR15840254 WGS of Citrus clementina: 19 years old two branches of secondary order, 6 years old branches, 1 year flushes, b, 19_6_1_b_R03 ILLUMINA 16113509296 bp
SRR15840255 WGS of Citrus clementina: 19 years old two branches of secondary order, 2 year flushes, 19_0_2_R20 ILLUMINA 14359336246 bp
SRR15840256 WGS of Citrus clementina: 19 years old two branches of secondary order, 2 year flushes, 19_0_2_R19 ILLUMINA 15069839532 bp
SRR15840257 WGS of Citrus clementina: 27 years old dominant branch of primary order, 2 year flushes, 27_0_2_R18 ILLUMINA 13192957946 bp
SRR15840258 WGS of Citrus clementina: 27 years old dominant branch of primary order, 2 year flushes, 27_0_2_R17 ILLUMINA 14946954448 bp
SRR15840259 WGS of Citrus clementina: 19 years old two branches of secondary order, 6 years old branches, 2 year flushes, b, 19_6_2_b_R16 ILLUMINA 15539636790 bp
SRR15840260 WGS of Citrus clementina: 19 years old two branches of secondary order, 6 years old branches, 2 year flushes, b, 19_6_2_b_R15 ILLUMINA 13968977104 bp
SRR15840261 WGS of Citrus clementina: 19 years old two branches of secondary order, 6 years old branches, 2 year flushes, a, 19_6_2_a_R14 ILLUMINA 16937081072 bp
SRR15840262 WGS of Citrus clementina: 19 years old two branches of secondary order, 6 years old branches, 2 year flushes, a, 19_6_2_a_R13 ILLUMINA 13163570178 bp
SRR15840263 WGS of Citrus clementina: the most basal part of 36 years old trunk, 1 year flushes, a, 36_0_1_a_R12 ILLUMINA 13776914898 bp
SRR15840264 WGS of Citrus clementina: the most basal part of 36 years old trunk, 1 year flushes, a, 36_0_1_a_R11 ILLUMINA 13992794924 bp
SRR15840265 WGS of Citrus clementina: 19 years old two branches of secondary order, 6 years old branches, 1 year flushes, a, 19_6_1_a_R02 ILLUMINA 15474564308 bp
SRR15840266 WGS of Citrus clementina: 19 years old two branches of secondary order, 6 years old branches, 1 year flushes, a, 19_6_1_a_R01 ILLUMINA 14757640048 bp
PRJEB5808 Citrus clementine sequencing of Arrufatina and Nero varieties. Arrufatina and Nero varieties shared a gross deletion with phenotipic effect. Terol et al., 2015
2
Library Title Platform Total Base VCF File
ERR454508 WGS of Citrus clementina: fresh young leaves, Arrufatina, SAMEA2397415 ILLUMINA 24485745800 bp
ERR454509 WGS of Citrus clementina: fresh young leaves, Nero, SAMEA2397416 ILLUMINA 23934169200 bp
PRJNA225835 WGS sequence reads of Clementine for prediction of variation by comparison to haploid Clementine genome assembly -
1
Library Title Platform Total Base VCF File
SRR1022654 WGS of Citrus clementina: Citrus clementina hort ex. Tanaka from IVIA &CNAG, Spain ILLUMINA 50708747200 bp

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