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Bioproject Description Publication GVCF File Library Num.
PRJNA950219 Resequencing of Coffea canephore. Vi et al., 2023
10
Library Title Platform Total Base VCF File
SRR24012832 WGS of Coffea canephora: cultivated adult plant with leaf from Viet Nam, TR9 ILLUMINA 25070385600 bp
SRR24012833 WGS of Coffea canephora: cultivated adult plant with leaf from Viet Nam, TR6 ILLUMINA 25754698200 bp
SRR24012834 WGS of Coffea canephora: cultivated adult plant with leaf from Viet Nam, TR5 ILLUMINA 24312294300 bp
SRR24012835 WGS of Coffea canephora: cultivated adult plant with leaf from Viet Nam, TR4 ILLUMINA 27083913300 bp
SRR24012836 WGS of Coffea canephora: cultivated adult plant with leaf from Viet Nam, TR15 ILLUMINA 25869719700 bp
SRR24012837 WGS of Coffea canephora: cultivated adult plant with leaf from Viet Nam, TR14 ILLUMINA 28384603500 bp
SRR24012838 WGS of Coffea canephora: cultivated adult plant with leaf from Viet Nam, TR11 ILLUMINA 24436527900 bp
SRR24012839 WGS of Coffea canephora: cultivated adult plant with leaf from Viet Nam, TR10 ILLUMINA 25471593600 bp
SRR24012840 WGS of Coffea canephora: cultivated adult plant with leaf from Viet Nam, TR13 ILLUMINA 21760509000 bp
SRR24012841 WGS of Coffea canephora: cultivated adult plant with leaf from Viet Nam, TR12 ILLUMINA 23652591300 bp
PRJNA803612 Study of coffea canephora adaptation to climate variation. Vi et al., 2023
53
Library Title Platform Total Base VCF File
SRR18336404 WGS of Coffea canephora: wild adult plant with leaf from Cote d'Ivoire, 20135 ILLUMINA 40124570400 bp
SRR18336406 WGS of Coffea canephora: wild adult plant with leaf from Cote d'Ivoire, 20159 ILLUMINA 49977405200 bp
SRR18336445 WGS of Coffea canephora: wild adult plant with leaf from Republic of the Congo, 20731 ILLUMINA 48344091600 bp
SRR18336447 WGS of Coffea canephora: wild adult plant with leaf from Republic of the Congo, 20723 ILLUMINA 40370242200 bp
SRR18336448 WGS of Coffea canephora: wild adult plant with leaf from Republic of the Congo, 20716 ILLUMINA 33788645280 bp
SRR18336449 WGS of Coffea canephora: wild adult plant with leaf from Togo, 20708 ILLUMINA 47807244200 bp
SRR18336452 WGS of Coffea canephora: wild adult plant with leaf from Central African Republic, 20504 ILLUMINA 7925735520 bp
SRR17889351 WGS of Coffea canephora: wild adult plant with leaf from Democratic Republic of the Congo, 110 ILLUMINA 29042986896 bp
SRR18336405 WGS of Coffea canephora: wild adult plant with leaf from Cote d'Ivoire, 20145 ILLUMINA 9195809364 bp
SRR18336407 WGS of Coffea canephora: wild adult plant with leaf from Uganda, KL1-2 ILLUMINA 27443569860 bp
SRR18336408 WGS of Coffea canephora: wild adult plant with leaf from Cote d'Ivoire, 2931 ILLUMINA 34467689340 bp
SRR18336409 WGS of Coffea canephora: wild adult plant with leaf from Uganda, KL5-2 ILLUMINA 9771658596 bp
SRR18336410 WGS of Coffea canephora: wild adult plant with leaf from Democratic Republic of the Congo, M_1361 ILLUMINA 19151356644 bp
SRR18336411 WGS of Coffea canephora: wild adult plant with leaf from Democratic Republic of the Congo, M_1400 ILLUMINA 16169621832 bp
SRR18336412 WGS of Coffea canephora: wild adult plant with leaf from Democratic Republic of the Congo, M_1413 ILLUMINA 25398002952 bp
SRR18336413 WGS of Coffea canephora: wild adult plant with leaf from Uganda, MB3-1 ILLUMINA 20289537324 bp
SRR18336414 WGS of Coffea canephora: wild adult plant with leaf from Uganda, MB5-5 ILLUMINA 21522246480 bp
SRR18336415 WGS of Coffea canephora: wild adult plant with leaf from Uganda, ML3-3 ILLUMINA 20926892448 bp
SRR18336416 WGS of Coffea canephora: wild adult plant with leaf from Uganda, ML5-1 ILLUMINA 16999765020 bp
SRR18336417 WGS of Coffea canephora: wild adult plant with leaf from Democratic Republic of the Congo, NtCore825 ILLUMINA 16170460740 bp
SRR18336418 WGS of Coffea canephora: wild adult plant with leaf from Indonesia, Q121 ILLUMINA 27915202980 bp
SRR18336419 WGS of Coffea canephora: wild adult plant with leaf from Cote d'Ivoire, 20121 ILLUMINA 20090914200 bp
SRR18336420 WGS of Coffea canephora: wild adult plant with leaf from Democratic Republic of the Congo, Ramasoni3 ILLUMINA 28083288744 bp
SRR18336421 WGS of Coffea canephora: wild adult plant with leaf from Uganda, ZK2-5 ILLUMINA 16024911588 bp
SRR18336422 WGS of Coffea canephora: wild adult plant with leaf from Uganda, ZO-16 ILLUMINA 34868267460 bp
SRR18336423 WGS of Coffea canephora: wild adult plant with leaf from Cote d'Ivoire, 20233 ILLUMINA 19862115588 bp
SRR18336424 WGS of Coffea canephora: wild adult plant with leaf from Uganda, IT1-1 ILLUMINA 16204064184 bp
SRR18336425 WGS of Coffea canephora: wild adult plant with leaf from Democratic Republic of the Congo, K4.17.2 ILLUMINA 45930139400 bp
SRR18336426 WGS of Coffea canephora: wild adult plant with leaf from Uganda, KB2-1 ILLUMINA 16679423124 bp
SRR18336427 WGS of Coffea canephora: wild adult plant with leaf from France, HD_200 ILLUMINA 31062686661 bp
SRR18336428 WGS of Coffea canephora: wild adult plant with leaf from France, FRT81 ILLUMINA 27856887156 bp
SRR18336429 WGS of Coffea canephora: wild adult plant with leaf from Democratic Republic of the Congo, Can36 ILLUMINA 25013531340 bp
SRR18336430 WGS of Coffea canephora: wild adult plant with leaf from Democratic Republic of the Congo, Can34 ILLUMINA 33260820264 bp
SRR18336431 WGS of Coffea canephora: wild adult plant with leaf from Democratic Republic of the Congo, Can33 ILLUMINA 20394200988 bp
SRR18336432 WGS of Coffea canephora: wild adult plant with leaf from Democratic Republic of the Congo, Can12 ILLUMINA 19449363276 bp
SRR18336433 WGS of Coffea canephora: wild adult plant with leaf from Ghana, 2239 ILLUMINA 17337708612 bp
SRR18336434 WGS of Coffea canephora: wild adult plant with leaf from Uganda, BU-D15 ILLUMINA 73034749000 bp
SRR18336435 WGS of Coffea canephora: wild adult plant with leaf from Angola, Briz2 ILLUMINA 27243568950 bp
SRR18336436 WGS of Coffea canephora: wild adult plant with leaf from Indonesia, BP409 ILLUMINA 14421093624 bp
SRR18336437 WGS of Coffea canephora: wild adult plant with leaf from Angola, Boim7 ILLUMINA 21365359470 bp
SRR18336438 WGS of Coffea canephora: wild adult plant with leaf from Uganda, BD5-1 ILLUMINA 16488425520 bp
SRR18336439 WGS of Coffea canephora: wild adult plant with leaf from Central African Republic, 29054 ILLUMINA 28858240152 bp
SRR18336440 WGS of Coffea canephora: wild adult plant with leaf from Central African Republic, 29004 ILLUMINA 26587280160 bp
SRR18336441 WGS of Coffea canephora: wild adult plant with leaf from Guinea, 20852 ILLUMINA 28750712256 bp
SRR18336442 WGS of Coffea canephora: wild adult plant with leaf from Guinea, 20803 ILLUMINA 19788541164 bp
SRR18336443 WGS of Coffea canephora: wild adult plant with leaf from Republic of the Congo, 20738 ILLUMINA 34495894944 bp
SRR18336444 WGS of Coffea canephora: wild adult plant with leaf from Central African Republic, 1765 ILLUMINA 12524129604 bp
SRR18336446 WGS of Coffea canephora: wild adult plant with leaf from Republic of the Congo, 20726 ILLUMINA 24189094944 bp
SRR18336450 WGS of Coffea canephora: wild adult plant with leaf from Central African Republic, 20516 ILLUMINA 30886666020 bp
SRR18336453 WGS of Coffea canephora: wild adult plant with leaf from Cote d'Ivoire, 20349 ILLUMINA 18760342104 bp
SRR18336454 WGS of Coffea canephora: wild adult plant with leaf from Cote d'Ivoire, 20245 ILLUMINA 24645309948 bp
SRR18336455 WGS of Coffea canephora: wild adult plant with leaf from Angola, 935 ILLUMINA 43050273840 bp
SRR18336456 WGS of Coffea canephora: wild adult plant with leaf from Gabon, 111 ILLUMINA 13387698828 bp
PRJNA505204 Whole-genome resequencing of 93 coffee accessions unveils diversity and genetic relationship of three important Coffea species. -
34
Library Title Platform Total Base VCF File
SRR8194222 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh18 ILLUMINA 8672441400 bp
SRR8194223 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh17 ILLUMINA 9138584100 bp
SRR8194224 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh16 ILLUMINA 9251470800 bp
SRR8194225 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh15 ILLUMINA 9661496700 bp
SRR8194226 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh14 ILLUMINA 6168631200 bp
SRR8194227 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh13 ILLUMINA 11201462400 bp
SRR8194228 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh12 ILLUMINA 9121018500 bp
SRR8194229 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh11 ILLUMINA 10707200700 bp
SRR8194230 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh20 ILLUMINA 9740126100 bp
SRR8194231 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh19 ILLUMINA 9151158600 bp
SRR8194259 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh25 ILLUMINA 7211189700 bp
SRR8194260 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh26 ILLUMINA 7836189900 bp
SRR8194261 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh23 ILLUMINA 9088139100 bp
SRR8194262 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh24 ILLUMINA 7577206800 bp
SRR8194263 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh21 ILLUMINA 7787986500 bp
SRR8194264 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh22 ILLUMINA 8542542000 bp
SRR8194265 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh60 ILLUMINA 6974163300 bp
SRR8194266 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh59 ILLUMINA 6386695200 bp
SRR8194271 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh58 ILLUMINA 9382977300 bp
SRR8194272 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh57 ILLUMINA 7749193500 bp
SRR8194295 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh63 ILLUMINA 8374001100 bp
SRR8194296 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh64 ILLUMINA 8234179500 bp
SRR8194297 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh61 ILLUMINA 8091428100 bp
SRR8194298 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh62 ILLUMINA 8455869600 bp
SRR8194305 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh6 ILLUMINA 9487528500 bp
SRR8194306 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh5 ILLUMINA 8750676900 bp
SRR8194307 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh8 ILLUMINA 9696438900 bp
SRR8194308 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh7 ILLUMINA 9947935200 bp
SRR8194309 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh2 ILLUMINA 10553511600 bp
SRR8194310 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh1 ILLUMINA 9393128700 bp
SRR8194311 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh4 ILLUMINA 9562435200 bp
SRR8194312 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh3 ILLUMINA 11099253900 bp
SRR8194313 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh10 ILLUMINA 9103288500 bp
SRR8194314 WGS of Coffea canephora: fruit stage leaf from Democratic Republic of the Congo, gh9 ILLUMINA 7687248300 bp
PRJNA438407 High-depth whole genome sequencing of 760 vascular plants with specimens and images available Raw sequence reads. -
1
Library Title Platform Total Base VCF File
SRR7121624 WGS of Coffea canephora: leaves from China:yunnan, RL0268 BGISEQ 79927973800 bp

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