| Bioproject |
Description |
Publication |
GVCF File |
Library Num. |
| PRJNA266703 |
Integrated genetic and physical map for Chinese chestnut to identify bacterial artificial clones (BACs) located in the three previously identified QTL regions conferring blight resistance. |
- |
 |
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR1646589 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
LS454 |
332219240 bp |
|
| SRR1646590 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
LS454 |
379457169 bp |
|
| SRR1646591 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
LS454 |
307412458 bp |
|
| SRR1646592 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
LS454 |
332212659 bp |
|
| SRR1646621 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
ILLUMINA |
703225000 bp |
|
| SRR1646622 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
ILLUMINA |
597840000 bp |
|
| SRR1646623 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
ILLUMINA |
680114000 bp |
|
| SRR1646624 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
ILLUMINA |
718527000 bp |
|
| SRR1646625 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
ILLUMINA |
823459716 bp |
|
| SRR1646626 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
ILLUMINA |
713034776 bp |
|
| SRR1646627 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
ILLUMINA |
776491090 bp |
|
| SRR1646628 |
WGS of Castanea mollissima: plant with leaf from USA: Meadowview\, VA, Vanuxem, Chinese Chestnut 'Vanuxem' |
ILLUMINA |
842634610 bp |
|
|
| PRJNA454342 |
Genome resequencing of Chinese chestnuts for identification of regions under selection during domestication |
- |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR7085626 |
WGS of Castanea mollissima: plant with leaf from China: Guizhou Province\, Shuicheng County, , Guizhou-1 |
ILLUMINA |
8594920262 bp |
|
| SRR7085627 |
WGS of Castanea mollissima: plant with leaf from China: Hebei Province\, Kuancheng County, , Hebei-Orchard |
ILLUMINA |
6175704628 bp |
|
| SRR7085628 |
WGS of Castanea mollissima: plant with leaf from China: Shaanxi Province\, Liuba County, , Shaanxi-3 |
ILLUMINA |
5612880521 bp |
|
| SRR7085629 |
WGS of Castanea mollissima: plant with leaf from China: Shaanxi Province\, Ningshan County, , Shaanxi-Orchard |
ILLUMINA |
9890960153 bp |
|
| SRR7085630 |
WGS of Castanea mollissima: plant with leaf from China: Shaanxi Province\, Zhuque Forest and Heihe Forest, , Shaanxi-1 |
ILLUMINA |
7344176568 bp |
|
| SRR7085631 |
WGS of Castanea mollissima: plant with leaf from China: Shaanxi Province\, Ningshan County, , Shaanxi-2 |
ILLUMINA |
8630350892 bp |
|
| SRR7085632 |
WGS of Castanea mollissima: plant with leaf from China: Yunnan Province\, Dayao County, , Yunnan-1 |
ILLUMINA |
7375355857 bp |
|
| SRR7085633 |
WGS of Castanea mollissima: plant with leaf from China: Yunnan Province\, Fengqing County, , Yunnan-2 |
ILLUMINA |
11619019171 bp |
|
| SRR7085634 |
WGS of Castanea mollissima: plant with leaf from China: Beijing Province\, Yangqing County, , Beijing-Orchard |
ILLUMINA |
5240552948 bp |
|
| SRR7085635 |
WGS of Castanea mollissima: plant with leaf from USA: Ohio\, Carroll County, , Ohio-Orchard |
ILLUMINA |
3498422441 bp |
|
|
| PRJNA527178 |
High-quality whole genome assembly of C. mollissima |
Xing et al., 2019 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR8731963 |
WGS of Castanea mollissima: 30 year plant with leave from China: Hubei province, Chestnut_leaves |
ILLUMINA |
35437062600 bp |
|
| SRR8755082 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
3322002968 bp |
|
| SRR8755083 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
1964828171 bp |
|
| SRR8755084 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
6598358324 bp |
|
| SRR8755085 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
6453332106 bp |
|
| SRR8755086 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
4000214 bp |
|
| SRR8755087 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
6634029003 bp |
|
| SRR8755088 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
4821012521 bp |
|
| SRR8755089 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
5089477913 bp |
|
| SRR8755090 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
3768722159 bp |
|
| SRR8755091 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
4030051917 bp |
|
| SRR8755092 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
942255424 bp |
|
| SRR8755093 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
3551727447 bp |
|
| SRR8755094 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
6566023745 bp |
|
| SRR8755095 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
6289982409 bp |
|
| SRR8755096 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
4255399313 bp |
|
| SRR8755097 |
WGS of Castanea mollissima: 30 year plant with Leaves from China:Hubei, Leaves |
PACBIO_SMRT |
4416374822 bp |
|
|
| PRJNA540917 |
High-quality genome assembly for mollissima and characterize evolutionary relationships among related chestnut taxa |
Sun et al., 2020 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR9005602 |
WGS of Castanea mollissima: plant with leaf from China, Ca44 |
ILLUMINA |
8114062397 bp |
|
| SRR9005603 |
WGS of Castanea mollissima: plant with leaf from China, Ca41 |
ILLUMINA |
9993758976 bp |
|
| SRR9005605 |
WGS of Castanea mollissima: plant with leaf from China, Ca45 |
ILLUMINA |
10709861582 bp |
|
| SRR9005616 |
WGS of Castanea mollissima: plant with leaf from China, Ca29 |
ILLUMINA |
10892379973 bp |
|
| SRR9005617 |
WGS of Castanea mollissima: plant with leaf from China, Ca28 |
ILLUMINA |
8134927156 bp |
|
| SRR9005618 |
WGS of Castanea mollissima: plant with leaf from China, Ca23 |
ILLUMINA |
7985626295 bp |
|
| SRR9005619 |
WGS of Castanea mollissima: plant with leaf from China, Ca22 |
ILLUMINA |
8140922015 bp |
|
| SRR9005620 |
WGS of Castanea mollissima: plant with leaf from China, Ca21 |
ILLUMINA |
8448122829 bp |
|
| SRR9005621 |
WGS of Castanea mollissima: plant with leaf from China, Ca20 |
ILLUMINA |
8254479891 bp |
|
| SRR9005622 |
WGS of Castanea mollissima: plant with leaf from China, Ca27 |
ILLUMINA |
8881250196 bp |
|
| SRR9005623 |
WGS of Castanea mollissima: plant with leaf from China, Ca26 |
ILLUMINA |
10054257583 bp |
|
| SRR9005624 |
WGS of Castanea mollissima: plant with leaf from China, Ca25 |
ILLUMINA |
8825587274 bp |
|
| SRR9005625 |
WGS of Castanea mollissima: plant with leaf from China, Ca24 |
ILLUMINA |
8528324975 bp |
|
| SRR9005626 |
WGS of Castanea mollissima: plant with leaf from China, Ca34 |
ILLUMINA |
7978785829 bp |
|
| SRR9005627 |
WGS of Castanea mollissima: plant with leaf from China, Ca35 |
ILLUMINA |
7970648801 bp |
|
| SRR9005628 |
WGS of Castanea mollissima: plant with leaf from China, Ca36 |
ILLUMINA |
8153838513 bp |
|
| SRR9005629 |
WGS of Castanea mollissima: plant with leaf from China, Ca37 |
ILLUMINA |
8227033310 bp |
|
| SRR9005630 |
WGS of Castanea mollissima: plant with leaf from China, Ca30 |
ILLUMINA |
10086981196 bp |
|
| SRR9005631 |
WGS of Castanea mollissima: plant with leaf from China, Ca31 |
ILLUMINA |
8616703559 bp |
|
| SRR9005632 |
WGS of Castanea mollissima: plant with leaf from China, Ca32 |
ILLUMINA |
10592061975 bp |
|
| SRR9005633 |
WGS of Castanea mollissima: plant with leaf from China, Ca33 |
ILLUMINA |
10649323670 bp |
|
| SRR9005634 |
WGS of Castanea mollissima: plant with leaf from China, Ca38 |
ILLUMINA |
8040371636 bp |
|
| SRR9005635 |
WGS of Castanea mollissima: plant with leaf from China, Ca40 |
ILLUMINA |
9456311363 bp |
|
| SRR9005646 |
WGS of Castanea mollissima: plant with leaf from China, Ca12 |
ILLUMINA |
8834219434 bp |
|
| SRR9005647 |
WGS of Castanea mollissima: plant with leaf from China, Ca13 |
ILLUMINA |
8085748505 bp |
|
| SRR9005648 |
WGS of Castanea mollissima: plant with leaf from China, Ca10 |
ILLUMINA |
8889726760 bp |
|
| SRR9005649 |
WGS of Castanea mollissima: plant with leaf from China, Ca11 |
ILLUMINA |
8238651588 bp |
|
| SRR9005650 |
WGS of Castanea mollissima: plant with leaf from China, Ca16 |
ILLUMINA |
8401372006 bp |
|
| SRR9005651 |
WGS of Castanea mollissima: plant with leaf from China, Ca17 |
ILLUMINA |
8901944437 bp |
|
| SRR9005652 |
WGS of Castanea mollissima: plant with leaf from China, Ca14 |
ILLUMINA |
8070957504 bp |
|
| SRR9005653 |
WGS of Castanea mollissima: plant with leaf from China, Ca15 |
ILLUMINA |
8248167849 bp |
|
| SRR9005654 |
WGS of Castanea mollissima: plant with leaf from China, Ca18 |
ILLUMINA |
8207763014 bp |
|
| SRR9005655 |
WGS of Castanea mollissima: plant with leaf from China, Ca19 |
ILLUMINA |
10038344185 bp |
|
| SRR9005664 |
WGS of Castanea mollissima: plant with leaf from China, Ca03 |
ILLUMINA |
9116393887 bp |
|
| SRR9005665 |
WGS of Castanea mollissima: plant with leaf from China, Ca04 |
ILLUMINA |
7907664520 bp |
|
| SRR9005666 |
WGS of Castanea mollissima: plant with leaf from China, Ca01 |
ILLUMINA |
9915697100 bp |
|
| SRR9005667 |
WGS of Castanea mollissima: plant with leaf from China, Ca02 |
ILLUMINA |
8087215015 bp |
|
| SRR9005668 |
WGS of Castanea mollissima: plant with leaf from China, Ca07 |
ILLUMINA |
8101466119 bp |
|
| SRR9005669 |
WGS of Castanea mollissima: plant with leaf from China, Ca08 |
ILLUMINA |
8038477636 bp |
|
| SRR9005670 |
WGS of Castanea mollissima: plant with leaf from China, Ca05 |
ILLUMINA |
8575856041 bp |
|
| SRR9005671 |
WGS of Castanea mollissima: plant with leaf from China, Ca06 |
ILLUMINA |
8636688333 bp |
|
| SRR9005672 |
WGS of Castanea mollissima: plant with leaf from China, Ca09 |
ILLUMINA |
8144124087 bp |
|
| SRR9005673 |
WGS of Castanea mollissima: plant with leaf from China, Ca102 |
ILLUMINA |
8929710780 bp |
|
| SRR10672058 |
WGS of Castanea mollissima: plant with leaf from China, ngs-reads |
ILLUMINA |
80815437000 bp |
|
|
| PRJNA559042 |
Construction of pseudomolecules for the Castanea mollissima genome |
Wang et al., 2020 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR10270291 |
WGS of Castanea mollissima: 2 years plant with leaf from China, N11-1, N11 |
PACBIO_SMRT |
67051482003 bp |
|
| SRR10270292 |
WGS of Castanea mollissima: 2 years plant with leaf from China, N11-1, N11 |
ILLUMINA |
1.10833E+11 bp |
|
| SRR10270293 |
WGS of Castanea mollissima: 2 years plant with leaf from China, N11-1, N11 |
ILLUMINA |
54552640114 bp |
|
|
| PRJNA769510 |
Castanea mollissima Blume Genome sequencing and assembly |
- |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR16288268 |
WGS of Castanea mollissima: plant with leaves from China: Shachang Village\, Miyun District\, Beijing, YanHong, YanHong |
ILLUMINA |
9295566286 bp |
|
| SRR16288271 |
WGS of Castanea mollissima: plant with leaves from China: Shachang Village\, Miyun District\, Beijing, HeiShan, HeiShanZhai7 |
ILLUMINA |
9132974628 bp |
|
|
| PRJNA804196 |
Whole-genome resequencing of Castanea species |
Sandercock et al., 2022 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR17928999 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL18 |
ILLUMINA |
19704632052 bp |
|
| SRR17929001 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL17 |
ILLUMINA |
17843417528 bp |
|
| SRR17929003 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL16 |
ILLUMINA |
16981629422 bp |
|
| SRR17929004 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL15 |
ILLUMINA |
13989240376 bp |
|
| SRR17929005 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL14 |
ILLUMINA |
15981774466 bp |
|
| SRR17929006 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL13 |
ILLUMINA |
30706241694 bp |
|
| SRR17929007 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL12 |
ILLUMINA |
17842328818 bp |
|
| SRR17929008 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL11 |
ILLUMINA |
21967262560 bp |
|
| SRR17929009 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL10 |
ILLUMINA |
19400778074 bp |
|
| SRR17929010 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL09 |
ILLUMINA |
18803873564 bp |
|
| SRR17929011 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL08 |
ILLUMINA |
17334074596 bp |
|
| SRR17929012 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL07 |
ILLUMINA |
10281954514 bp |
|
| SRR17929014 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL06 |
ILLUMINA |
834194366 bp |
|
| SRR17929015 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL05 |
ILLUMINA |
18475046904 bp |
|
| SRR17929016 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL04 |
ILLUMINA |
17310553628 bp |
|
| SRR17929017 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL03 |
ILLUMINA |
18165960474 bp |
|
| SRR17929246 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL20 |
ILLUMINA |
19738067982 bp |
|
| SRR17929247 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL19 |
ILLUMINA |
18198618754 bp |
|
| SRR17929340 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL02 |
ILLUMINA |
21900150308 bp |
|
| SRR17929341 |
WGS of Castanea mollissima: plant with leaf from USA:Ohio, MOLL01 |
ILLUMINA |
17584020970 bp |
|
|
| PRJNA912750 |
T2T gap-less genome assembly of Castanea mollissima provides insights into molecular mechanisms of seed starch accumulation |
- |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR22978884 |
WGS of Castanea mollissima: five year mature( fruiting period of chestnut) plant with leaves, Lan You, Castanea mollissima |
ILLUMINA |
89140873200 bp |
|
| SRR22978885 |
WGS of Castanea mollissima: five year mature( fruiting period of chestnut) plant with leaves, Lan You, Castanea mollissima |
PACBIO_SMRT |
28875230219 bp |
|
| SRR22978886 |
WGS of Castanea mollissima: five year mature( fruiting period of chestnut) plant with leaves, Lan You, Castanea mollissima |
ILLUMINA |
79943571300 bp |
|
|
Species Info.
Omics Data
Seq. Analysis
Project
12