Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA1021599 A haplotype-resolved reference genome of Quercus alba sheds light on the evolutionary history of oaks -
1
Library Title Platform Total Base VCF File
SRR27110051 WGS of Quercus rubra: Adult stage plant with Leaves from USA: Indiana, rubra_SM1 ILLUMINA 12851730200 bp
PRJNA977443 Whole genome resequencing data of 59 individuals from two locations in the USA -
59
Library Title Platform Total Base VCF File
SRR24768705 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_35_R BGISEQ 26067904500 bp
SRR24768706 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_34_R BGISEQ 26256672900 bp
SRR24768707 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_33_R BGISEQ 26099859000 bp
SRR24768708 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_32_R BGISEQ 26153345700 bp
SRR24768709 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_85_R BGISEQ 26086629600 bp
SRR24768710 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_84_R BGISEQ 26203707900 bp
SRR24768711 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_64_R BGISEQ 26104680600 bp
SRR24768712 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_63_R BGISEQ 26249012100 bp
SRR24768713 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_62_R BGISEQ 26243730600 bp
SRR24768714 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_61_R BGISEQ 26027985900 bp
SRR24768715 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_60_R BGISEQ 26085542400 bp
SRR24768716 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_59_R BGISEQ 26221867800 bp
SRR24768717 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_56_R BGISEQ 26120355000 bp
SRR24768718 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_1a_R BGISEQ 26121101400 bp
SRR24768719 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_55_R BGISEQ 26167422600 bp
SRR24768720 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_54_R BGISEQ 26220498600 bp
SRR24768721 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_53_R BGISEQ 26059141500 bp
SRR24768722 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_52_R BGISEQ 26255128800 bp
SRR24768723 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_51_R BGISEQ 26177245500 bp
SRR24768724 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_50_R BGISEQ 26063277300 bp
SRR24768725 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_49_R BGISEQ 26148112800 bp
SRR24768726 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_48_R BGISEQ 26105278800 bp
SRR24768727 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_47_R BGISEQ 26120799300 bp
SRR24768728 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_46_R BGISEQ 26137108200 bp
SRR24768729 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_12_R BGISEQ 26078437800 bp
SRR24768730 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_22_R BGISEQ 26099026800 bp
SRR24768731 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_20_R BGISEQ 26088513600 bp
SRR24768732 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_19_R BGISEQ 26026182600 bp
SRR24768733 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_12_R BGISEQ 26018462400 bp
SRR24768734 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_11_R BGISEQ 26481221700 bp
SRR24768735 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_10_R BGISEQ 26216719800 bp
SRR24768736 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_09_R BGISEQ 26259925200 bp
SRR24768737 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_03_R BGISEQ 26091785400 bp
SRR24768738 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_02_R BGISEQ 26075439000 bp
SRR24768739 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_5a_R BGISEQ 26098520400 bp
SRR24768740 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_11_R BGISEQ 26102714100 bp
SRR24768741 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_54_R BGISEQ 26173299300 bp
SRR24768742 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_53_R BGISEQ 26088444000 bp
SRR24768743 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_52_R BGISEQ 26101554600 bp
SRR24768744 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_51_R BGISEQ 26059535700 bp
SRR24768745 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_50_R BGISEQ 26167276200 bp
SRR24768746 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_4a_R BGISEQ 26206820100 bp
SRR24768747 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_49_R BGISEQ 26092430400 bp
SRR24768748 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_48_R BGISEQ 26101710900 bp
SRR24768749 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_47_R BGISEQ 26243214600 bp
SRR24768750 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_46_R BGISEQ 26040322200 bp
SRR24768751 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_10_R BGISEQ 26218905300 bp
SRR24768752 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_45_R BGISEQ 26076464100 bp
SRR24768753 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_44_R BGISEQ 26218808100 bp
SRR24768754 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_43_R BGISEQ 26140128300 bp
SRR24768755 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_42_R BGISEQ 26248348500 bp
SRR24768756 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_41_R BGISEQ 26050204500 bp
SRR24768757 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_40_R BGISEQ 26030510100 bp
SRR24768758 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_39_R BGISEQ 26262260100 bp
SRR24768759 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_38_R BGISEQ 26259869100 bp
SRR24768760 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_37_R BGISEQ 26168895900 bp
SRR24768761 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_36_R BGISEQ 26063037000 bp
SRR24768762 WGS of Quercus rubra: mature stage plant with leaves from USA:Lisle\,Illinois, chi_09_R BGISEQ 26018076600 bp
SRR24768763 WGS of Quercus rubra: mature stage plant with leaves from USA:Covington\,Michigan, mi_58_R BGISEQ 26074851300 bp
PRJNA938173 This project generated a high quality Quercus rubra genome assembly and annotation. Kapoor et al., 2023
7
Library Title Platform Total Base VCF File
SRR23696570 WGS of Quercus rubra: Mature tree stage plant with Leaves from USA: Indiana, SM1316 OXFORD_NANOPORE 86566368223 bp
SRR23696571 WGS of Quercus rubra: Mature tree stage plant with Leaves from USA: Indiana, SM2 OXFORD_NANOPORE 1.27054E+11 bp
SRR23696573 WGS of Quercus rubra: Mature tree stage plant with Dormant leaf buds and twig bark tissues from USA: Indiana, NRO_Reference ILLUMINA 1.70042E+11 bp
SRR23696575 WGS of Quercus rubra: Mature tree stage plant with Dormant leaf buds and twig bark tissues from USA: Indiana, NRO_Reference ILLUMINA 13359819750 bp
SRR23696569 WGS of Quercus rubra: Mature tree stage plant with Leaves from USA: Indiana, SM1370 OXFORD_NANOPORE 49840244388 bp
SRR23696572 WGS of Quercus rubra: Mature tree stage plant with Leaves from USA: Indiana, SM1 OXFORD_NANOPORE 61483302133 bp
SRR23696574 WGS of Quercus rubra: Mature tree stage plant with Dormant leaf buds and twig bark tissues from USA: Indiana, NRO_Reference PACBIO_SMRT 57848686187 bp
PRJEB54826 Researchers characterized crop plant genomes and generated the first ancient tree genomes, shedding light on evolutionary origins, selection processes, and trait production. Wagner et al., 2023
1
Library Title Platform Total Base VCF File
ERR10015092 WGS of Quercus rubra: plant with leaf from France, Q.rubra ILLUMINA 29065719969 bp
PRJNA607895 Raw reads from samples of danish species, sequenced with the purpose of assembling mito genomes for future references. Margaryan et al., 2020
2
Library Title Platform Total Base VCF File
SRR12920474 WGS of Quercus rubra: plant with Leaves from Denmark, Quercus_rubra_DM598 ILLUMINA 2036452440 bp
SRR12518824 WGS of Quercus rubra: plant with Leaves from Denmark, Quercus_rubra_DM598 ILLUMINA 2159681124 bp

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