| Bioproject |
Description |
Publication |
GVCF File |
Library Num. |
| PRJNA957263 |
Here, two endemic apricots, Prunus hongpingensis (PHP) and P. zhengheensis (PZH), are focused on in this study to characterize their phylogenetic relationship, genetic diversity, demographic history, interspecific gene flow and genomic basis of local climate adaptation using whole-genome resequencing data. |
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 |
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR24211840 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx010 |
ILLUMINA |
5489948400 bp |
|
| SRR24211841 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx009 |
ILLUMINA |
6911069400 bp |
|
| SRR24211842 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx008 |
ILLUMINA |
5286735300 bp |
|
| SRR24211843 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx007 |
ILLUMINA |
4410521700 bp |
|
| SRR24211844 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx006 |
ILLUMINA |
5123710500 bp |
|
| SRR24211845 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx005 |
ILLUMINA |
6381864300 bp |
|
| SRR24211846 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx004 |
ILLUMINA |
5237926800 bp |
|
| SRR24211847 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx003 |
ILLUMINA |
7308213900 bp |
|
| SRR24211854 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx013 |
ILLUMINA |
4585631400 bp |
|
| SRR24211855 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx012 |
ILLUMINA |
4450127400 bp |
|
| SRR24211856 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx011 |
ILLUMINA |
5723179800 bp |
|
| SRR24211857 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx002 |
ILLUMINA |
6568743900 bp |
|
| SRR24211858 |
WGS of Prunus armeniaca: leaf from China, Prunus armeniaca var. armeniaca, hpx001 |
ILLUMINA |
5617962300 bp |
|
|
| PRJNA803008 |
Using the whole genome sequencing data to obtain complete chloroplast genome sequence of apricot variety 'Zhenzhuyou'. |
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|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR17868296 |
WGS of Prunus armeniaca: seedling plant with leaf from China，Zhenzhuyou_L1_A001 |
ILLUMINA |
8890021200 bp |
|
|
| PRJNA645279 |
The pan-genome of P. persica and its population structure analysis using P. persica and some wild related species. |
- |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR12283426 |
WGS of Prunus armeniaca: young plant with leaf from China，Wild relatives, Luo Tuo Huang, ZGSP-1030-1 |
ILLUMINA |
12411697800 bp |
|
|
| PRJEB37669 |
Haplotype resolved chromosome level assembly of Apricot generated by application of gamete binning on single cell sequencing data of gametes. |
Campoy et al., 2020 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| ERR4093216 |
WGS of Prunus armeniaca: fruit from Spain: Murcia, Rojo Pasion, pruArmRojPasfruitPacBio |
PACBIO_SMRT |
6251960759 bp |
|
| ERR4093217 |
WGS of Prunus armeniaca: fruit from Spain: Murcia, Rojo Pasion, pruArmRojPasfruitPacBio |
PACBIO_SMRT |
7010768985 bp |
|
| ERR4093218 |
WGS of Prunus armeniaca: fruit from Spain: Murcia, Rojo Pasion, pruArmRojPasfruitPacBio |
PACBIO_SMRT |
6666376828 bp |
|
| ERR4092064 |
WGS of Prunus armeniaca: leaf from Spain: Murcia, Currot, pruArmCurrotParental |
ILLUMINA |
16226087299 bp |
|
| ERR4092065 |
WGS of Prunus armeniaca: leaf from Spain: Murcia, Orange Red, pruArmOragneRedParental |
ILLUMINA |
15720264273 bp |
|
| ERR4093790 |
WGS of Prunus armeniaca: pollen from Spain: Murcia, Rojo Pasion, pruArmRojPas10xSC |
ILLUMINA |
815888502 bp |
|
| ERR4093791 |
WGS of Prunus armeniaca: pollen from Spain: Murcia, Rojo Pasion, pruArmRojPas10xSC |
ILLUMINA |
11892103366 bp |
|
| ERR4093792 |
WGS of Prunus armeniaca: pollen from Spain: Murcia, Rojo Pasion, pruArmRojPas10xSC |
ILLUMINA |
5626488868 bp |
|
| ERR4093793 |
WGS of Prunus armeniaca: pollen from Spain: Murcia, Rojo Pasion, pruArmRojPas10xSC |
ILLUMINA |
17257569186 bp |
|
| ERR4093794 |
WGS of Prunus armeniaca: pollen from Spain: Murcia, Rojo Pasion, pruArmRojPas10xSC |
ILLUMINA |
655128188 bp |
|
| ERR4093795 |
WGS of Prunus armeniaca: pollen from Spain: Murcia, Rojo Pasion, pruArmRojPas10xSC |
ILLUMINA |
6962202104 bp |
|
| ERR4093796 |
WGS of Prunus armeniaca: pollen from Spain: Murcia, Rojo Pasion, pruArmRojPas10xSC |
ILLUMINA |
5776479280 bp |
|
| ERR4093797 |
WGS of Prunus armeniaca: pollen from Spain: Murcia, Rojo Pasion, pruArmRojPas10xSC |
ILLUMINA |
14023463454 bp |
|
|
| PRJNA560760 |
Prunus armeniaca cultivar:Lito Genome sequencing and assembly |
De Mori et al., 2019 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR10011977 |
WGS of Prunus armeniaca: adult plant with leaf, Lito, 30kb |
PACBIO_SMRT |
2027049302 bp |
|
| SRR10011978 |
WGS of Prunus armeniaca: adult plant with leaf, Lito, 20kb |
PACBIO_SMRT |
3183302676 bp |
|
|
Species Info.
Omics Data
Seq. Analysis
Project
13